Introduction

A repo to setup and run experiments so they can be run in parallel on a slurm cluster.

Build

Prepare the log folder by executing reset_slurm_logs.sh Then run the run.sh script, passing the experiment to run as an argument (eg. run.sh 123)

Name		Name	Last commit message	Last commit date
Latest commit History 2 Commits
jars		jars
params		params
utils		utils
vre		vre
vrna		vrna
.gitignore		.gitignore
LICENSE		LICENSE
README.md		README.md
analyze.sh		analyze.sh
compress.sh		compress.sh
generate.sh		generate.sh
load_variables.sh		load_variables.sh
mysql_exec.sh		mysql_exec.sh
mysql_exec_job.sh		mysql_exec_job.sh
plot.sh		plot.sh
prepare.sh		prepare.sh
prepare_bnk.sh		prepare_bnk.sh
prepare_load.sh		prepare_load.sh
prepare_rna.sh		prepare_rna.sh
prepare_sample.sh		prepare_sample.sh
prepare_walk.sh		prepare_walk.sh
reset_slurm_logs.sh		reset_slurm_logs.sh
run.sh		run.sh
sample_mysql_creds.env		sample_mysql_creds.env
sbatch_analyze.sh		sbatch_analyze.sh
sbatch_compress.sh		sbatch_compress.sh
sbatch_generate.sh		sbatch_generate.sh
sbatch_generate_job_baseline.sh		sbatch_generate_job_baseline.sh
sbatch_generate_job_vre.sh		sbatch_generate_job_vre.sh
sbatch_manual_plotter.sh		sbatch_manual_plotter.sh
sbatch_plotter.sh		sbatch_plotter.sh
sbatch_prepare.sh		sbatch_prepare.sh
sbatch_prepare_sample.sh		sbatch_prepare_sample.sh
sbatch_uncompress.sh		sbatch_uncompress.sh
sbatch_vrna_generate_phenotypes.sh		sbatch_vrna_generate_phenotypes.sh
uncompress.sh		uncompress.sh
vrna_generate_phenotypes.sh		vrna_generate_phenotypes.sh
vrna_run.sh		vrna_run.sh

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Repository files navigation

Introduction

Build

About

Uh oh!

Releases

Packages

Uh oh!

Contributors

Uh oh!

Languages

Folders and files

Latest commit

History

Repository files navigation

Introduction

Build

About

Resources

License

Uh oh!

Stars

Watchers

Forks

Releases

Packages 0

Uh oh!

Contributors

Uh oh!

Languages

Packages