The union step

[wushyer]

Hi, I use the pipeline to do the analysis in Rat, I first use you sample to run. But met one problem in union.py step.
Could you help me check it? Thanks

bedtools subtract -b human-dataset/gencode28-human-ncRNA.bed -a sample_input.bed -s -f 0.5 -A > bed/cluster/sample_input
echo sample_input >> prefix_list
python tools/union.py prefix_list ./bed/cluster/ > cluster_union.tsv
awk 'NR>1{print $1}' cluster_union.tsv
chrY
chrX
chr13
chr12
chr11
chr10
chr17
chr16
chr15
chr14
chr19
chr18
chrM
chr22
chr20
chr21
chr7
chr6
chr5
chr4
chr3
chr2
chr1
chr9
chr8