Complex Systems

Code

At Home in the Universe - Kauffman

• https://github.com/mtwestra/button-model
• https://github.com/minellogiacomo/Sendero
• https://github.com/husonlab/catlynet
• https://github.com/leonzucchini/CompetitionOnRuggedLandscapes
• https://github.com/verzep/pyRBN?files=1
• https://gist.github.com/wybo/f4c4388138450bdf9732
• https://www.google.com/search?q=nk+model+github&oq=nk+model+github&aqs=chrome..69i57.2038j0j1&sourceid=chrome&ie=UTF-8

Synchronization

• https://www.youtube.com/watch?v=t-_VPRCtiUg Synchronization
• https://ncase.me/fireflies/
• https://www.complexity-explorables.org/explorables/ride-my-kuramotocycle/ kuramoto model

Attractors

• https://github.com/xMissingno/Coding-Projects
• https://github.com/HackerPoet/Chaos-Equations

Papers

• The Suprising Design of Market Economies - Marhsall
• https://www.researchgate.net/publication/235356744_What_Is_Complexity_Science_Really
• Complex Systems Playlist: https://www.youtube.com/watch?v=vp8v2Udd_PM
• Learning about Complexity Science : https://www.napcrg.org/media/1278/beginner-complexity-science-module.pdf
• Complexity Theory : https://www.mdpi.com/2079-8954/7/1/4/pdf-vor
• Systemantics : https://en.wikipedia.org/wiki/Systemantics
• SFI : https://www.santafe.edu/applied-complexity/office
• Worlds Hidden in Plain Sight: Thirty Years of Complexity Thinking at the Santa Fe Institute
• Waves of Novelities into Adjacent spaces : https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5464662/
• Complexity Scholars : https://scholar.google.com/citations?view_op=search_authors&hl=en&mauthors=label:complexity
• Shekar Chandra : https://github.com/shakes76/ChaoS
• Universality in transitions to Chaos : http://www.cns.gatech.edu/PHYS-4267/UFO.pdf
  • CHAOS: CLASSICAL AND QUANTUM : http://chaosbook.org/

Information Theory

• Information Theory of Individuality https://arxiv.org/abs/1412.2447
  • Flack Arxiv https://arxiv.org/search/q-bio?searchtype=author&query=Flack%2C+J+C
  • Krakauer Arxiv https://arxiv.org/search/q-bio?searchtype=author&query=Krakauer%2C+D
• Information Theory of Deep Learning https://www.youtube.com/results?search_query=information+theory+of+deep+learning

Capra

• Web of Life - Fritjof Capra
• The Hidden Connections - Frijof Capra

Kauffman

• Kauffman : https://scholar.google.com/citations?user=yoPM0F8AAAAJ&hl=en
• At Home in the Universe - Stuart Kauffman
• Antichaos and adaptation : https://www.imsc.res.in/~sitabhra/teaching/sb15b/StuartKauffman_SciAm_1991_Antichaos_and_adaptation.pdf
• Coevolution on the edge of chaos : https://www.sccs.swarthmore.edu/users/08/bblonder/phys120/docs/kauffman.pdf
• Reinventing the Sacred - Kauffman
• Origins of Order : https://static1.squarespace.com/static/5657eb54e4b022a250fc2de4/t/566fa2ac40667ad8b9b6127c/1450156716552/1993_Kauffman_The+Origins+of+Order.pdf

Strogatz

• Strogatz: Surprising true story of ... : https://web.archive.org/web/20200527002318/https://iscpif.fr/wp-content/uploads/2016/11/THE-SURPRISING-TRUE-2STORY-OF-PATRICK-S-RUPERT-R.-SLY-S.-AND-GUS-G.-.pdf
• Dyanmics of correlated novelties : https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5376195/
• Nonlinear Dynamics and Chaos : http://arslanranjha.weebly.com/uploads/4/8/9/3/4893701/nonlinear-dynamics-and-chaos-strogatz.pdf
• Exploring Complex Networks : https://wwwf.imperial.ac.uk/~mjfield1/research/networks/General/SS_exploring_complex_networks.pdf

Concepts

• Route to Chaos
  • Fiegenbaum Constans
• Logistic Map
• Kolmogorov–Arnold–Moser theorem

Chaos

• List of Chaotic Maps

Emergence

• 22. Emergence and Complexity: https://www.youtube.com/watch?v=o_ZuWbX-CyE
• Self-organising textures from cellular automata : https://news.ycombinator.com/item?id=26112959
  • Chemical Basis of Morphogenisis : https://www.dna.caltech.edu/courses/cs191/paperscs191/turing.pdf
• From Simple to Complex and Ultra-complex Systems: A Paradigm Shift Towards Non-Abelian Systems Dynamics : http://cogprints.org/7757/1/BaianuPoli50Nu18.pdf

Biological Emergence

• ORGANISMIC SUPERCATEGORIES:II. ON MULTISTABLE SYSTEMS : http://cogprints.org/7752/3/OSIImultist1970.pdf
• On a relational theory of biological systems: a natural model for complex biological behavior: https://arxiv.org/pdf/1705.10394.pdf

Mathematical descriptions of emergence:

• The Mathematics of Emergence∗ : http://www.cs.utah.edu/~tch/CS5300/resources/refs/Cucker2006.pdf
• On Emergence and Explanation
  • https://www.researchgate.net/publication/23740406_On_Emergence_and_Explanation
  • https://www.nbi.dk/~emmeche/coPubl/97d.NABCE/ExplEmer.html
• A Theory of Emergence and Entropy in Systems of Systems : https://www.sciencedirect.com/science/article/pii/S1877050913010740

Strong and Weak Emergence

• http://www.consc.net/papers/emergence.pdf
• Emergence Playlist: https://www.youtube.com/watch?v=QItTWZc7hKs
• Ontological vs Epistimologic: https://www.youtube.com/watch?v=GVL2Y5z2jLU
• What is Strong Emergence | Closer to Truth https://www.youtube.com/watch?v=zkffv2nVF64
• Sean Carrol: Emergence - youtube.com/watch?v=0_PdLja-eGQ
• Emergence: Chris Fields - https://www.youtube.com/watch?v=3fgR96zk-MU

Emergence and Complexity

• Emergence in Complex Systems : https://www.researchgate.net/publication/284472704_Emergence_in_complex_systems
• The Concept of Emergence in Complexity Science: Finding Coherence between Theory and Practice : https://services.ini.uzh.ch/admin/extras/doc_get.php?id=41950

Consciousness

• ITT : Tononi
• Brain’s ‘Background Noise’ May Hold Clues to Persistent Mysteries : https://news.ycombinator.com/item?id=26067455

Dynamical Systems

• Existence of perpetual points in nonlinear dynamical systems and its applications : https://arxiv.org/pdf/1409.4921.pdf

Dyanimcal Systems and Knowledge Creation (dynamical knowledge systems pattern)

• Dynamic Patterns: The Self-Organization of Brain and Behavior : https://www.researchgate.net/publication/224982322_Dynamic_Patterns_The_Self-Organization_of_Brain_and_Behavior
• Thinking patterns and knowledge dynamics : https://www.researchgate.net/publication/295366505_Thinking_patterns_and_knowledge_dynamics
• Dynamic Knowledge Systems : http://www.providersedge.com/docs/km_articles/Dynamic_Knowledge_Systems.pdf
• Theory of Knowledge in System Dynamics Models https://www.researchgate.net/publication/257563268_Theory_of_Knowledge_in_System_Dynamics_Models
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