- a toxdb annotator for genomic comparison for comparative genomics.
- async and parallel threaded.
- It has a integrated spanning window algorithm that you can define the window size and it will show the gff compare with in the spanning window.
- Added today plotting functions and tensor plotters.
- It gives you ready to use tensors for machine and deep learning for proteins.
cargo build
A toxodb annotator.
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Gaurav Sablok,
Email: codeprog@icloud.com
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Usage: toxannotator <COMMAND>
Commands:
toxsummarize Summarize the strains across the Toxodb
protein-plotter Plot the protein coding regions
protein-tensor Prepare the protein tensor for the machine and deep learning
help Print this message or the help of the given subcommand(s)
Options:
-h, --help Print help
-V, --version Print version
Summarize the strains across the Toxodb
Usage: toxannotator toxsummarize <FILEPATHINPUT_STRAIN1> <FILEPATHINPUT_STRAIN2> <OVERLAPWINDOW> <READFASTA1> <READFASTA2>
Arguments:
<FILEPATHINPUT_STRAIN1> inputfile1
<FILEPATHINPUT_STRAIN2> inputfile2
<OVERLAPWINDOW> overlapwindow
<READFASTA1> readfasta1
<READFASTA2> readfasta2
Options:
-h, --help Print help
Plot the protein coding regions
Usage: toxannotator protein-plotter <INPUTFILE1> <INPUTFILE2> <INPUTFASTAFILE1> <INPUTFASTAFILE2>
Arguments:
<INPUTFILE1> input file 1
<INPUTFILE2> input file 2
<INPUTFASTAFILE1> input fasta file 1
<INPUTFASTAFILE2> input fasta file 2
Options:
-h, --help Print help
Prepare the protein tensor for the machine and deep learning
Usage: toxannotator protein-tensor <INPUTFILE>
Arguments:
<INPUTFILE> input file for the tensor
Options:
-h, --help Print help
Gaurav Sablok
codeprog@icloud.com