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Add temporal graph evolution & RuVector integration research#197

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ruvnet merged 23 commits intomainfrom
claude/rf-mincut-sensing-uHnQX
Mar 9, 2026
Merged

Add temporal graph evolution & RuVector integration research#197
ruvnet merged 23 commits intomainfrom
claude/rf-mincut-sensing-uHnQX

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@ruvnet ruvnet commented Mar 9, 2026

GOAP Agent 8 output: 1,528-line SOTA research document covering temporal
graph models (TGN, JODIE, DyRep), RuVector graph memory design, mincut
trajectory tracking with Kalman filtering, event detection pipelines,
compressed temporal storage, cross-room transition graphs, and a 5-phase
integration roadmap.

Part of RF Topological Sensing research swarm (10 agents).

https://claude.ai/code/session_01DGUAowNScGVp88bK2eiuRv

claude and others added 23 commits March 8, 2026 19:11
GOAP Agent 8 output: 1,528-line SOTA research document covering temporal
graph models (TGN, JODIE, DyRep), RuVector graph memory design, mincut
trajectory tracking with Kalman filtering, event detection pipelines,
compressed temporal storage, cross-room transition graphs, and a 5-phase
integration roadmap.

Part of RF Topological Sensing research swarm (10 agents).

https://claude.ai/code/session_01DGUAowNScGVp88bK2eiuRv
GOAP Agent 4 output: 896-line SOTA document covering Graph Transformers
(Graphormer, SAN, GPS, TokenGT), Temporal Graph Transformers (TGN, TGAT,
DyRep), ViT for RF spectrograms, transformer-based mincut prediction,
positional encoding for RF graphs, foundation models for RF sensing, and
efficient edge deployment with INT8 quantization.

Part of RF Topological Sensing research swarm (10 agents).

https://claude.ai/code/session_01DGUAowNScGVp88bK2eiuRv
GOAP Agent 3 output: 1,110-line document covering GAT for RF graphs,
self-attention for CSI sequences, cross-attention multi-link fusion,
attention-weighted differentiable mincut, spatial node attention,
antenna-level subcarrier attention, and efficient attention variants
(linear, sparse, LSH, S4/Mamba). 8 ASCII architecture diagrams.

Part of RF Topological Sensing research swarm (10 agents).

https://claude.ai/code/session_01DGUAowNScGVp88bK2eiuRv
GOAP Agent 5 output: 698-line document covering classical mincut complexity,
sublinear approximation (sampling, sparsifiers), dynamic mincut with lazy
recomputation hybrid, streaming sketch algorithms, Benczur-Karger
sparsification, local partitioning (PageRank-guided cuts), randomized
methods reliability analysis, and Rust implementation with const-generic
RfGraph, zero-alloc Stoer-Wagner, SIMD batch updates.

Part of RF Topological Sensing research swarm (10 agents).

https://claude.ai/code/session_01DGUAowNScGVp88bK2eiuRv
GOAP Agent 2 output: ~700-line document covering CSI feature extraction,
coherence metrics (cross-correlation, mutual information, phasor coherence),
multipath stability scoring (MUSIC, ESPRIT, ISTA), temporal windowing
(EMA, Welford, Kalman), noise robustness (phase noise, AGC, clock drift),
edge weight normalization, and implementation architecture showing 32KB
memory for 120 edges within ESP32-S3 capability.

Part of RF Topological Sensing research swarm (10 agents).

https://claude.ai/code/session_01DGUAowNScGVp88bK2eiuRv
GOAP Agent 7 output: 1,226-line document covering SimCLR/MoCo/BYOL for CSI,
AETHER-Topo dual-head extension, coherence boundary detection with multi-scale
analysis, delta-driven updates (2-12x efficiency), self-supervised pre-training
protocol, triplet networks for 5-state edge classification, and MERIDIAN
cross-environment transfer with EWC continual learning.

Part of RF Topological Sensing research swarm (12 agents).

https://claude.ai/code/session_01DGUAowNScGVp88bK2eiuRv
GOAP Agent 9 output: 1,383-line document covering Fresnel zone analysis,
node density vs resolution (16-node/5m room → 30-60cm), Cramer-Rao lower
bounds with Fisher Information Matrix, graph cut resolution theory,
multi-frequency enhancement (6cm coherent dual-band limit), RF tomography
comparison, experimental validation protocols, and resolution scaling laws
(8.8cm theoretical limit).

Part of RF Topological Sensing research swarm (12 agents).

https://claude.ai/code/session_01DGUAowNScGVp88bK2eiuRv
GOAP Agent 1 output: Graph-theoretic foundations covering max-flow/min-cut
for RF (Ford-Fulkerson, Stoer-Wagner, Karger), RF as dynamic graph with
CSI coherence weights, topological change detection via Fiedler vector and
Cheeger inequality, dynamic graph algorithms, comparison to classical RF
sensing, formal mathematical framework, and 9 open research questions.

Part of RF Topological Sensing research swarm (12 agents).

https://claude.ai/code/session_01DGUAowNScGVp88bK2eiuRv
GOAP Agent 6 output: ESP32 CSI capabilities (52/114 subcarriers), 16-node
mesh topology with 120 edges, TDM synchronized sensing (3ms slots),
computational budget (Stoer-Wagner uses 0.07% of one core), channel hopping,
power analysis (0.44W/node), dual-core firmware architecture, and edge vs
server computing with 100x data reduction on-device.

Part of RF Topological Sensing research swarm (12 agents).

https://claude.ai/code/session_01DGUAowNScGVp88bK2eiuRv
GOAP Agent 10 output: End-to-end architecture with pipeline diagrams,
existing crate integration mapping, new rf_topology module design (DDD
aggregate roots), 100ms latency budget breakdown, 3-phase prototype plan
(4-node POC → 16-node room → 72-node multi-room), benchmark design with
8 metrics, ADR-044 draft, and Rust trait definitions (EdgeWeightComputer,
TopologyGraph, MinCutSolver, BoundaryInterpolator).

Part of RF Topological Sensing research swarm (12 agents).

https://claude.ai/code/session_01DGUAowNScGVp88bK2eiuRv
Agent 11: Quantum-level sensors (729 lines) — NV centers, SQUIDs, Rydberg
atoms, quantum illumination, quantum graph theory (walks, spectral, QAOA),
hybrid classical-quantum architecture, quantum ML (VQC, kernels, reservoir
computing), NISQ applications (D-Wave, VQE), hardware roadmap.

Agent 12: Quantum biomedical sensing (827 lines) — whole body biomagnetic
mapping, neural field imaging without electrodes, circulation sensing,
cellular EM signaling, non-contact diagnostics, coherence-based diagnostics
(disease as coherence breakdown), neural interfaces, multimodal observatory,
room-scale ambient health monitoring, graph-based biomedical analysis.

Part of RF Topological Sensing research swarm (12 agents).

https://claude.ai/code/session_01DGUAowNScGVp88bK2eiuRv
Master index for RF Topological Sensing research compendium covering:
graph theory foundations, CSI edge weights, attention mechanisms,
transformers, sublinear algorithms, ESP32 hardware, contrastive learning,
temporal graphs, resolution analysis, system architecture, quantum sensors,
and quantum biomedical sensing. Includes key findings, proposed ADRs
(044, 045), and 5-phase implementation roadmap.

https://claude.ai/code/session_01DGUAowNScGVp88bK2eiuRv
- Doc 21: Comprehensive SOTA map (2023-2026) of brain sensors, decoders,
  and visualization systems with RuVector/mincut positioning analysis
- Doc 22: Ten application domains for brain state observatory including
  disease detection, BCI, cognitive monitoring, mental health diagnostics,
  neurofeedback, dream reconstruction, cognitive research, HCI, wearables,
  and brain network digital twins with strategic roadmap

https://claude.ai/code/session_01DGUAowNScGVp88bK2eiuRv
Comprehensive 600+ line document covering NV center physics, neural
magnetic field sources, sensor architecture, SQUID comparison, signal
processing pipeline, RuVector integration, and development roadmap.

https://claude.ai/code/session_01DGUAowNScGVp88bK2eiuRv
Workspace structure for the rUv Neural brain topology analysis system.
12 mix-and-match crates with shared dependencies including RuVector
integration, petgraph, rustfft, and WASM/ESP32 support.

https://claude.ai/code/session_01DGUAowNScGVp88bK2eiuRv
Initial implementation of the rUv Neural brain topology analysis system:
- ruv-neural-core: Core types, traits, errors, RVF format (compiles)
- ruv-neural-sensor: NV diamond, OPM, EEG sensor interfaces (in progress)
- ruv-neural-signal: DSP, filtering, spectral, connectivity (in progress)
- ruv-neural-graph: Brain connectivity graph construction (in progress)
- ruv-neural-mincut: Dynamic minimum cut topology analysis (in progress)
- ruv-neural-embed: RuVector graph embeddings (in progress)
- ruv-neural-memory: Persistent neural state memory + HNSW (compiles)
- ruv-neural-decoder: Cognitive state classification + BCI (in progress)
- ruv-neural-esp32: ESP32 edge sensor integration (compiles)
- ruv-neural-wasm: WebAssembly browser bindings (in progress)
- ruv-neural-viz: Visualization + ASCII rendering (in progress)
- ruv-neural-cli: CLI tool (in progress)

Agents still writing remaining modules. Next: fix compilation, tests, push.

https://claude.ai/code/session_01DGUAowNScGVp88bK2eiuRv
… pass

- Fix node2vec.rs type inference error (Vec<_> → Vec<Vec<f64>>)
- Fix artifact.rs with full filter-based detection implementations
- Fix signal crate ConnectivityMetric re-export and trait method names
- Fix embed crate EmbeddingGenerator trait implementations
- Complete spectral, topology, and node2vec embedders with tests
- Complete preprocessing pipeline with sequential stage processing
- All workspace crates compile cleanly, 0 test failures

https://claude.ai/code/session_01DGUAowNScGVp88bK2eiuRv
Tauri's generate_context!() macro requires RGBA PNG icons. All 5 icon
files (32x32.png, 128x128.png, 128x128@2x.png, icon.icns, icon.ico)
were RGB-only, causing a proc macro panic on Linux builds.

Fixes #200

Co-Authored-By: claude-flow <ruv@ruv.net>
- Implemented Subcarrier Manifold to visualize amplitude data as a 3D surface with height and age attributes.
- Created Vitals Oracle to represent vital signs using toroidal rings and particle trails, incorporating breathing and heart rate dynamics.
- Both modules utilize Three.js for rendering and include custom shaders for visual effects.
…witness verification

Replace all stubs/mocks with production physics-based signal models:
- NV Diamond: ODMR Lorentzian dip, 1/f pink noise (Voss-McCartney), brain oscillations
- OPM: SERF-mode, 50/60Hz powerline harmonics, full cross-talk compensation
  via Gaussian elimination with partial pivoting
- EEG: 5 frequency bands, eye blink artifacts (Fp1/Fp2), muscle artifacts,
  impedance-based thermal noise floor
- ESP32 ADC: ring-buffer reader with calibration signal generator, i16 clamp

Security hardening (SEC-001 through SEC-005):
- RVF bounded allocation (16MB metadata, 256MB payload)
- sample_rate validation (>0, finite)
- Signal NaN/Inf rejection
- ADC resolution_bits overflow clamp
- HNSW HashSet visited tracking + bounds checks

Performance optimizations (PERF-001 through PERF-005):
- 67x fewer FFTs via pre-computed analytic signals
- VecDeque O(1) eviction in memory store
- Thread-local FFT planner caching
- BrainGraph::validate() for edge/weight integrity
- Eigenvalue convergence early termination

Ed25519 witness verification system:
- 41 capability attestations across all 12 crates
- SHA-256 digest + Ed25519 signature
- CLI commands: `witness --output` and `witness --verify`

README: ethics warning, hardware parts list (AliExpress), assembly instructions

Co-Authored-By: claude-flow <ruv@ruv.net>
Add version badges linking to each published crate on crates.io,
cargo add instructions, and crate search link in the Crate Map table.

Co-Authored-By: claude-flow <ruv@ruv.net>
Co-Authored-By: claude-flow <ruv@ruv.net>
@ruvnet ruvnet merged commit 341d9e0 into main Mar 9, 2026
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2 participants