Popular repositories Loading

1. bioml bioml Public

   Binary classification toolkit for biomedical ML (SVM, XGBoost, KNN, and NN) with shared preprocessing, ROC/AUC evaluation, and YAML configurable hyperparameter tuning

   Python

2. cancer-omics-pipeline cancer-omics-pipeline Public

   End-to-end Snakemake pipeline for pan-cancer multi-omic analysis (QC, RNA-seq alignment, differential expression, variant calling, MSI/TMB scoring, and microbiome profiling)

   Python

3. pubmed-miner pubmed-miner Public

   PubMed literature mining tool which fetches, scores, clusters, and entity-annotates abstracts from a free-text query. Exports a structured Excel report for grant hypothesis development.

   Python

4. epic-methylation-pipeline epic-methylation-pipeline Public

   Unsupervised Illumina EPIC v2 methylation array pipeline (QC, NOOB normalization, PCA, hierarchical clustering, heatmap, MDS, and UMAP from raw IDAT files)

   R

5. lantern-gwas lantern-gwas Public

   Genome-wide association study pipeline for primary lymphedema, secondary lymphedema, and lipedema within the All of Us Research Program (data v8)

   Python