The current documentation of CNORode doesn't include the updated version of optimisation pipeline with enhanced scatter search (eSS) combined with DHC as an alternative set of solvers: http://bioconductor.org/packages/release/bioc/vignettes/CNORode/inst/doc/CNORode-vignette.pdf. The link to an example script to run this pipeline still appears in the CNORode2017 repository: https://github.com/saezlab/CNORode2017 while the script itself is store in another repository CPT_QSPtutorial: https://github.com/saezlab/CPT_QSPtutorial/blob/master/CellNOptR_optimisation.R.
Please consider updating the documentation/vignette in the CNORode package accordingly as it is rather difficult for the new CNORode users to get to the right example file without any guidance.
The current documentation of CNORode doesn't include the updated version of optimisation pipeline with enhanced scatter search (eSS) combined with DHC as an alternative set of solvers: http://bioconductor.org/packages/release/bioc/vignettes/CNORode/inst/doc/CNORode-vignette.pdf. The link to an example script to run this pipeline still appears in the CNORode2017 repository: https://github.com/saezlab/CNORode2017 while the script itself is store in another repository CPT_QSPtutorial: https://github.com/saezlab/CPT_QSPtutorial/blob/master/CellNOptR_optimisation.R.
Please consider updating the documentation/vignette in the CNORode package accordingly as it is rather difficult for the new CNORode users to get to the right example file without any guidance.