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ParTIpy v0.1.0

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@psl-schaefer psl-schaefer released this 31 Jan 20:13
· 32 commits to main since this release
v0.1.0
33bbb14

Added

  • Added optimizer aliases ("PCHA" for "projected_gradients" and "FW" for "frank_wolfe") across the public API, including caching filters and documentation, plus regression tests to ensure both names yield identical results.
  • Added quantile-based continuous enrichment for gene expression and numeric adata.obs columns with ParTI-style binning, max-in-bin0 criteria, and optional NaN ignoring for obs columns.
  • Added quantile-based categorical enrichment for adata.obs labels with ParTI-style binning, max-in-bin0 filtering, hypergeometric over-representation testing, configurable background contrast, and minimum category count filtering.
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