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v0.3.1 — halfmap-qc CLI

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@sarthaktexas sarthaktexas released this 26 Jun 16:02
v0.3.1
4e54fc9

Install

pip install cryoem-halfmap-qc
# or from git:
pip install "git+https://github.com/sarthaktexas/cryoem-halfmap-qc.git@v0.3.1"

Highlights

  • halfmap-qc CLI — features, analyze, reliability, cohort, cohort-ids, help
  • Interactive TUI — run halfmap-qc in a terminal for a guided menu
  • Packaged drivers — cohort and reliability pipelines work after pip install (no scripts/ path required)
  • PyPI publish workflow — this release triggers automated upload if trusted publishing is configured
  • ResMap support — locres method comparison and alignment scripts
  • Cluster scripts — *.sbatch gitignored; use README sbatch --wrap one-liner on ARC

Quick start

halfmap-qc cohort --pending          # batch from cohort/manifest.csv
halfmap-qc cohort --emd-id 49450     # single map
halfmap-qc help                      # full command reference

Full changelog (since v0.2.3)

  • Add halfmap-qc CLI, interactive TUI, and PyPI packaging
  • ResMap local-resolution comparison and cohort metric exports
  • Placement utility and locres LOO extensions
  • Trim README; gitignore cluster .sbatch files
  • Thesis figure scripts remain local-only (gitignored)
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