Summary
- Path-based CLI —
features, analyze, and reliability require explicit map paths (no thesis defaults or cohort subcommands).
- Rich interactive TUI — colored menu, ASCII banner, guided full pipeline.
halfmap_metrics — replaces the old half_map_repro module naming; MRC exports use halfmap_ prefix.- Slim README — PyPI install only.
- CI fix — CLI help test updated for current install text.
Install
pip install cryoem-halfmap-qc
halfmap-qc
Breaking changes
- Removed
halfmap-qc cohort / cohort-ids from the installed CLI (thesis batch: python scripts/run_cohort_pipeline.py).
reliability and analyze require --contour and all map paths explicitly.
