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Original file line number Diff line number Diff line change
Expand Up @@ -44,7 +44,7 @@
*
* @author Christian Dietz (University of Konstanz)
* @param <T>
* @implNote op names='copy, copy.iterableInterval', priority='1.0'
* @implNote op names='copy, copy.iterableInterval, copy.img', priority='1.0'
*/
public class CopyII<T> implements Computers.Arity1<IterableInterval<T>, IterableInterval<T>> {

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Original file line number Diff line number Diff line change
Expand Up @@ -42,7 +42,7 @@
*
* @author Christian Dietz (University of Konstanz)
* @param <T>
* @implNote op names='copy, copy.rai', priority='1.0'
* @implNote op names='copy, copy.rai, copy.img', priority='10.0'
*/
public class CopyRAI<T> implements Computers.Arity1<RandomAccessibleInterval<T>, RandomAccessibleInterval<T>> {

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Original file line number Diff line number Diff line change
Expand Up @@ -39,7 +39,7 @@ public class OpRegressionTest extends AbstractOpTest {

@Test
public void opDiscoveryRegressionIT() {
long expected = 1444;
long expected = 1457;
long actual = StreamSupport.stream(ops.infos().spliterator(), false).count();
assertEquals(expected, actual);
}
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Original file line number Diff line number Diff line change
@@ -0,0 +1,166 @@
/*
* #%L
* ImageJ2 software for multidimensional image processing and analysis.
* %%
* Copyright (C) 2014 - 2022 ImageJ2 developers.
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* 1. Redistributions of source code must retain the above copyright notice,
* this list of conditions and the following disclaimer.
* 2. Redistributions in binary form must reproduce the above copyright notice,
* this list of conditions and the following disclaimer in the documentation
* and/or other materials provided with the distribution.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
* AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
* IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
* ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE
* LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
* CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
* SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
* INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
* CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
* ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
* POSSIBILITY OF SUCH DAMAGE.
* #L%
*/
package net.imagej.ops2.copy;

import static org.junit.jupiter.api.Assertions.assertEquals;

import org.junit.jupiter.api.Test;
import org.scijava.util.MersenneTwisterFast;

import net.imagej.ops2.AbstractOpTest;
import net.imglib2.Cursor;
import net.imglib2.RandomAccess;
import net.imglib2.RandomAccessibleInterval;
import net.imglib2.img.Img;
import net.imglib2.img.array.ArrayImgFactory;
import net.imglib2.img.cell.CellImgFactory;
import net.imglib2.img.planar.PlanarImgFactory;
import net.imglib2.type.numeric.RealType;
import net.imglib2.type.numeric.integer.UnsignedByteType;

/**
* Test copying of various Image types
*
* @author Christian Dietz (University of Konstanz)
*/
public class CopyImgsTest extends AbstractOpTest {

private <T extends RealType<T>> void populateData(Img<T> data) {
final MersenneTwisterFast r = new MersenneTwisterFast(System.currentTimeMillis());
final Cursor<T> inc = data.cursor();
while (inc.hasNext()) {
inc.next().setReal(r.nextDouble() * 255);
}
}

@Test
public void copyArrayImgNoOutputTest() {
var data = new ArrayImgFactory<>(new UnsignedByteType()).create(10, 10);
populateData(data);
@SuppressWarnings("unchecked")
final RandomAccessibleInterval<UnsignedByteType> output =
(RandomAccessibleInterval<UnsignedByteType>) ops.op("copy.img").arity1().input(
data).apply();

final Cursor<UnsignedByteType> inc = data.localizingCursor();
final RandomAccess<UnsignedByteType> outRA = output.randomAccess();

while (inc.hasNext()) {
inc.fwd();
outRA.setPosition(inc);
assertEquals(inc.get().get(), outRA.get().get());
}
}

@Test
public void copyArrayImgWithOutputTest() {
var data = new ArrayImgFactory<>(new UnsignedByteType()).create(10, 10);
populateData(data);
final Img<UnsignedByteType> output = data.factory().create(data.dimensionsAsLongArray());

ops.op("copy.img").arity1().input(data).output(output).compute();

final Cursor<UnsignedByteType> inc = data.cursor();
final Cursor<UnsignedByteType> outc = output.cursor();

while (inc.hasNext()) {
assertEquals(outc.next(), inc.next());
}
}

@Test
public void copyPlanarImgNoOutputTest() {
var data = new PlanarImgFactory<>(new UnsignedByteType()).create(10, 10);
populateData(data);
@SuppressWarnings("unchecked")
final RandomAccessibleInterval<UnsignedByteType> output =
(RandomAccessibleInterval<UnsignedByteType>) ops.op("copy.img").arity1().input(
data).apply();

final Cursor<UnsignedByteType> inc = data.localizingCursor();
final RandomAccess<UnsignedByteType> outRA = output.randomAccess();

while (inc.hasNext()) {
inc.fwd();
outRA.setPosition(inc);
assertEquals(inc.get().get(), outRA.get().get());
}
}

@Test
public void copyPlanarImgWithOutputTest() {
var data = new PlanarImgFactory<>(new UnsignedByteType()).create(10, 10);
populateData(data);
final Img<UnsignedByteType> output = data.factory().create(data.dimensionsAsLongArray());

ops.op("copy.img").arity1().input(data).output(output).compute();

final Cursor<UnsignedByteType> inc = data.cursor();
final Cursor<UnsignedByteType> outc = output.cursor();

while (inc.hasNext()) {
assertEquals(outc.next(), inc.next());
}
}

@Test
public void copyCellImgNoOutputTest() {
var data = new CellImgFactory<>(new UnsignedByteType()).create(10, 10);
populateData(data);
@SuppressWarnings("unchecked")
final RandomAccessibleInterval<UnsignedByteType> output =
(RandomAccessibleInterval<UnsignedByteType>) ops.op("copy.img").arity1().input(
data).apply();

final Cursor<UnsignedByteType> inc = data.localizingCursor();
final RandomAccess<UnsignedByteType> outRA = output.randomAccess();

while (inc.hasNext()) {
inc.fwd();
outRA.setPosition(inc);
assertEquals(inc.get().get(), outRA.get().get());
}
}

@Test
public void copyCellImgWithOutputTest() {
var data = new CellImgFactory<>(new UnsignedByteType()).create(10, 10);
populateData(data);
final Img<UnsignedByteType> output = data.factory().create(data.dimensionsAsLongArray());

ops.op("copy.img").arity1().input(data).output(output).compute();

final Cursor<UnsignedByteType> inc = data.cursor();
final Cursor<UnsignedByteType> outc = output.cursor();

while (inc.hasNext()) {
assertEquals(outc.next(), inc.next());
}
}
}
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