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Merged
merged 3 commits into from
Jul 19, 2023
Merged

Install kernel in workflow #135

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e235bd7
Install kernel in workflow
Jul 11, 2023
5c21619
Merge branch 'main' into update-workflow
martinkim0 Jul 19, 2023
9949f95
Change to new image tag
Jul 19, 2023
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10 changes: 7 additions & 3 deletions .github/workflows/run-linux-cuda.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -13,7 +13,7 @@ jobs:
runs-on: [self-hosted, Linux, X64, CUDA]

container:
image: martinkim0/scvi-tools:ubuntu-latest-mamba-latest-python-3.11-cuda-11
image: martinkim0/scvi-tools:py3.11-cu11
options: --user root --gpus all

steps:
Expand All @@ -22,11 +22,15 @@ jobs:

- name: Install dependencies
run: |
pip install -U scvi-tools[tutorials]
python -m pip install -U scvi-tools[tutorials]

- name: Install nbconvert
run: |
pip install -U nbconvert
python -m pip install -U jupyter ipykernel nbconvert

- name: Install kernel
run: |
python -m ipykernel install

- name: Run notebook
run: |
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