Fix bundling to remove token references right after parsing

[jeparlefrancais]

Closes #145

This change shifts the removal of token references to be immediately after parsing instead of being after applying the block into the bundled file.

• add entry to the changelog

[github-actions]

Coverage after merging fix-bundling-token-references into main will be

87.18%

Coverage Report for Changed Files

File	Stmts	Branches	Funcs	Lines	Uncovered Lines
src/rules/bundle/path_require_mode
mod.rs	89.35%	100%	94.74%	88.93%	100–102, 119–121, 125–127, 129, 179, 205–207, 222–224, 234–236, 258, 294–297, 323, 35