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Evaluation result paper#104

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tekrajchhetri wants to merge 50 commits intoperformance_cost_optimizationfrom
evaluation_result_paper
Open

Evaluation result paper#104
tekrajchhetri wants to merge 50 commits intoperformance_cost_optimizationfrom
evaluation_result_paper

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@tekrajchhetri
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This PR contains the following + one minor fix for resource merge.

Benchmark

This directory contains benchmark datasets based on standard evaluation sets.
It includes NCBI and S800, where the .jsonl files serve as the ground-truth annotations.

Link:
https://github.com/sensein/structsense/tree/evaluation_result_paper/evaluation/benchmark


NER

This directory contains evaluation results for three papers related to Named Entity Recognition (NER).

Link:
https://github.com/sensein/structsense/tree/evaluation_result_paper/evaluation/ner


Resource Extraction

This directory contains evaluation results for two papers focused on resource extraction.

Link:
https://github.com/sensein/structsense/tree/evaluation_result_paper/evaluation/resource_extraction


Pdf2Reproschema

This directory contains evaluation outputs for the Pdf2Reproschema pipeline.

Link:
https://github.com/sensein/structsense/tree/evaluation_result_paper/evaluation/pdf2reproschema

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Code Review

This pull request updates the documentation, configuration files, and evaluation results for the StructSense NER pipeline. The changes include adding an evaluation section to the README, updating configuration files for various models (Gemini, GPT, Qwen), and refining the output structure for evaluation results. The review comments regarding missing trailing newlines in various files are valid and should be addressed to ensure POSIX compliance.

@@ -0,0 +1 @@
{} No newline at end of file
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medium

The file is missing a newline character at the end. It's good practice to include a trailing newline for POSIX compliance and better compatibility with various tools.

Suggested change
{}
{}

@@ -0,0 +1,3 @@
{
"judge_method": "auto_approved"
} No newline at end of file
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medium

The file is missing a newline character at the end. It's good practice to include a trailing newline for POSIX compliance and better compatibility with various tools.

  "judge_method": "auto_approved"
}

config:
api_base: http://localhost:11434
model: nomic-embed-text

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medium

The file is missing a newline character at the end. It's good practice to include a trailing newline for POSIX compliance and better compatibility with various tools.

    model: nomic-embed-text

config:
api_base: http://localhost:11434
model: nomic-embed-text

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medium

The file is missing a newline character at the end. It's good practice to include a trailing newline for POSIX compliance and better compatibility with various tools.

    model: nomic-embed-text

config:
api_base: http://localhost:11434
model: nomic-embed-text

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medium

The file is missing a newline character at the end. It's good practice to include a trailing newline for POSIX compliance and better compatibility with various tools.

    model: nomic-embed-text

config:
api_base: http://localhost:11434
model: nomic-embed-text

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medium

The file is missing a newline character at the end. It's good practice to include a trailing newline for POSIX compliance and better compatibility with various tools.

    model: nomic-embed-text

config:
api_base: http://localhost:11434
model: nomic-embed-text

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medium

The file is missing a newline character at the end. It's good practice to include a trailing newline for POSIX compliance and better compatibility with various tools.

    model: nomic-embed-text

--config config_name.yaml \
--source input_pdf.pdf \
--api_key sk-<your_api_key>
``` No newline at end of file
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medium

The file is missing a newline character at the end. It's good practice to include a trailing newline for POSIX compliance and better compatibility with various tools.

Suggested change
```
--api_key sk-<your_api_key>

config:
api_base: http://localhost:11434
model: nomic-embed-text:v1.5
model: nomic-embed-text
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medium

The file is missing a newline character at the end. It's good practice to include a trailing newline for POSIX compliance and better compatibility with various tools.

    model: nomic-embed-text

config:
api_base: http://localhost:11434
model: nomic-embed-text:v1.5
model: nomic-embed-text
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medium

The file is missing a newline character at the end. It's good practice to include a trailing newline for POSIX compliance and better compatibility with various tools.

    model: nomic-embed-text

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