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This pull request improves the logging of the Sequence model. I've added a logging handler, using the Python logging module, to print custom log messages of various levels. From the command line interface users can control the level through the
--verboseand--silentoptions.The SequenceModel now keeps track of the total amount of time spent running each component, which is logged at the end of the run. Running the plot command now prints the various plot options—previously the user was left to guess or dig through the code to find out what those options were.