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Merged
sfilges merged 1 commit into from
Mar 3, 2026
Merged

Prepare for v1.0.0 release #4

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9 changes: 9 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -5,6 +5,15 @@ All notable changes to this project will be documented in this file.
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## [1.0.0] - 2026-03-03

First stable release. All v1.0 roadmap items complete — see `docs/ROADMAP.md` for the full list.
Includes correctness fixes (BLAST annotation, coordinate handling, off-target filtering),
compliance/audit infrastructure (provenance tracking, checksum verification, reproducible selectors),
panel QC reporting, and CLI improvements (template generation, Docker wrapper, init wizard).

No code changes from 1.0.0b4; this release promotes the beta to stable after final verification.

## [1.0.0b4] - 03-03-2026

### Changed
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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -198,7 +198,7 @@ plexus docker \
To run a specific tagged version or pass through extra `plexus run` flags:

```bash
plexus docker --tag 1.0.0b2 \
plexus docker --tag 1.0.0 \
--fasta /data/hg38.fa \
--input /data/junctions.csv \
--output /data/results/ \
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2 changes: 1 addition & 1 deletion docker/DOCKERFILE
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@@ -1,6 +1,6 @@
ARG BLAST_VERSION=2.17.0
ARG BCFTOOLS_VERSION=1.23
ARG PLEXUS_VERSION=1.0.0b3
ARG PLEXUS_VERSION=1.0.0

# ── Stage 1: Python venv builder ─────────────────────────────────────────────
FROM ghcr.io/astral-sh/uv:python3.13-bookworm-slim AS builder
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2 changes: 2 additions & 0 deletions docs/ROADMAP.md
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Expand Up @@ -13,6 +13,8 @@ not necessarily by implementation order.

## v1.0 — Production Release

> **Released: 2026-03-03** — All 21 items resolved (19 implemented, 1 cancelled, 1 was TEST-01).

The v1.0 milestone covers correctness issues, science-blocking bugs, and architecture gaps that
would compromise the reliability of a clinical-grade tool.

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2 changes: 1 addition & 1 deletion pyproject.toml
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Expand Up @@ -11,7 +11,7 @@ license = "GPL-2.0-or-later"
requires-python = ">=3.10,<3.14"
authors = [{ name = "Stefan Filges", email = "stefan.filges@pm.me" }]
classifiers = [
"Development Status :: 4 - Beta",
"Development Status :: 5 - Production/Stable",
"Intended Audience :: Science/Research",
"Topic :: Scientific/Engineering :: Bio-Informatics",
"License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)",
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2 changes: 1 addition & 1 deletion src/plexus/version.py
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@@ -1 +1 @@
__version__ = "1.0.0b4"
__version__ = "1.0.0"