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Commits on Sep 30, 2025

• Fix high memory usage bug with chunked HK relationship #1333

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  timothymillar

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  1374138

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Commits on Jul 1, 2025

• Update diversity definition (#1328)

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  milesroberts-123

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  af2b623

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Commits on Jun 24, 2025

• Deprecate `rechunk_bgen` that uses rechunker (#1325)

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  tomwhite

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  72f7588

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• Deprecate plink functions (#1324)

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  tomwhite

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• Remove typing-extensions dependency and just use standard library

  tomwhite

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  e2d0220

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• Remove unused dask distributed dependency

  tomwhite

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• Fix status badges

  tomwhite

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• Pin scipy < 1.16 to avoid https://github.com/statsmodels/statsmodels/issues/9584 (#1322)

  tomwhite

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Commits on May 28, 2025

• Fix vcf2zarr tests (#1317)

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  tomwhite

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Commits on Apr 22, 2025

• Revert "Fix vcf2zarr tests (#1309)"

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  tomwhite

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  2507dea

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• Use released bio2zarr in tests in docs

  tomwhite

  committed
  8333edc

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• Update actions/setup-python to v5

  tomwhite

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  5f6b34b

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• Update actions/checkout to v4

  tomwhite

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• Update actions/pre-commit to v3.0.1

  tomwhite

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Commits on Apr 14, 2025

• Fix vcf2zarr tests (#1309)

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  tomwhite

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Commits on Apr 7, 2025

• Add new section to changelog

  tomwhite

  committed
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• Update sgkit version to follow bio2zarr

  tomwhite

  committed
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• Updates for 0.10.0 release

  tomwhite

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• Test wheels on latest GitHub Actions Mac version

  tomwhite

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• build: adjust github action for pyproject.toml

  

  ianhi

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  tomwhite

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Commits on Apr 4, 2025

• build: switch to pyproject.toml

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  ianhi

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  tomwhite

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• format: run black format

  

  ianhi

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  tomwhite

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• doc: add editable install instructions

  

  ianhi

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  tomwhite

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Commits on Apr 2, 2025

• doc: add copybutton to code snippets

  

  ianhi

  authored and

  tomwhite

  committed
  4f99a08

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• Fix Cubed tests

  tomwhite

  committed
  7fdce78

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• Remove NumPy<2 pin

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  tomwhite

  committed
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• Exclude xarray 2025.03.1 due to rechunker incompatibility

  tomwhite

  committed
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Commits on Feb 11, 2025

• Fix windowing for cubed for regular chunks case

  tomwhite

  committed
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• Reformat long pytest line

  tomwhite

  committed
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Commits on Feb 10, 2025

• Fix Cubed tests by chunking appropriately

  tomwhite

  committed
  65f9927

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Commits on Jan 14, 2025

• Update GWAS tutorial vcf2zarr schema to include 'variant_length' field for indexing

  tomwhite

  committed
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• Fixes for zarr-python 3.0.0

  tomwhite

  committed
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• Fix CI for Zarr Python v3

  tomwhite

  committed
  9e6290e

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Commits on Jan 13, 2025

• Update changelog

  

  timothymillar

  authored and

  mergify[bot]

  committed
  5b96476

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• Remove CI tests of pedigree functions without JIT

  

  timothymillar

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  mergify[bot]

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