standalone-blast

Script for standalone BLAST to blast whole proteomes against each other.

Input:

• Two proteomes in FASTA format
• E-value cutoff threshold to filter statistical significance of matches

Output:

• One way BLAST, best hits between two proteomes.
• Reciprocal besthits between proteomes ie. potentially orthologus protein pairs.

Notes

To-Do

• List requirements to run (local blast installment, etc)
• Example command to illustrate usage
• E-value, organism names, file names should be inputted by the user
• Print info on outputted results