Updated 11. Workflow Architecture (markdown)
Updated 04. Getting Started (markdown)
Updated 05. Read Filtering (markdown)
Updated 08. Taxonomic Classification (markdown)
Updated 07. Comparison (markdown)
Updated 06. Assembly (markdown)
Updated 03. Offline Setup (markdown)
Updated 02. Install (markdown)
Updated 01. Home (markdown)
Updated 10. Scientific Benchmarks (markdown)
Update output file names
Fixed typo in rule name (comparison_output_heatmap_plots_reads_assembly_workflow)
Updating command line equivalents
Updating *.fa filenames
Clarified equivalent command text - "10%_of_both_paired-ends_in_full_interleaved_file"
Fix formatting
Fixed typo in rule name (tax_class_visualize_krona_kaijureport_contigs_workflow)