Key terms support #143

Enkidu93 · 2023-11-28T20:28:39Z

This change is

codecov-commenter · 2023-11-28T20:48:11Z

Codecov Report

Attention: 51 lines in your changes are missing coverage. Please review.

Comparison is base (e1106b4) 66.06% compared to head (dc85c31) 66.39%.
Report is 10 commits behind head on master.

Files	Patch %	Lines
...c/SIL.Machine/Corpora/ParatextBackupTermsCorpus.cs	73.22%	25 Missing and 9 partials ⚠️
...Machine.AspNetCore/Services/SmtTransferBuildJob.cs	23.80%	16 Missing ⚠️
...chine.AspNetCore/Services/NmtPreprocessBuildJob.cs	96.77%	1 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##           master     #143      +/-   ##
==========================================
+ Coverage   66.06%   66.39%   +0.32%     
==========================================
  Files         425      426       +1     
  Lines       33033    33208     +175     
  Branches     4433     4454      +21     
==========================================
+ Hits        21824    22047     +223     
+ Misses      10149    10093      -56     
- Partials     1060     1068       +8

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johnml1135 · 2023-11-28T20:51:03Z

src/SIL.Machine/Corpora/ParatextKeyTermsCorpus.cs line 23 at r1 (raw file):

                if (keyTermsFileEntry is null)
                {
                    throw new ArgumentException(

Should we really crash if there is no keyterms file? That appears excessive.

Enkidu93 · 2023-11-28T20:53:15Z

src/SIL.Machine/Corpora/ParatextKeyTermsCorpus.cs line 23 at r1 (raw file):

Previously, johnml1135 (John Lambert) wrote…

Should we really crash if there is no keyterms file? That appears excessive.

It's caught upstream. I think it's appropriate that if you try to make a ParatextKeyTermsCorpus with no key terms file, it throws an exception.

johnml1135 · 2023-11-28T20:55:23Z

src/SIL.Machine/Corpora/ParatextKeyTermsCorpus.cs line 23 at r1 (raw file):

Previously, Enkidu93 (Eli C. Lowry) wrote…

It's caught upstream. I think it's appropriate that if you try to make a ParatextKeyTermsCorpus with no key terms file, it throws an exception.

ok - as long as it just keeps going.

johnml1135 · 2023-11-28T20:57:33Z

src/SIL.Machine/Corpora/ParatextKeyTermsCorpus.cs line 61 at r1 (raw file):

                    Regex rx = new Regex(@"\[(.+?)\]", RegexOptions.Compiled);
                    Match match = rx.Match(gloss);
                    if (match.Success)

There should be a nice set of 20 or so tests to check this. I would recommend breaking out the parsing section as a separate function that takes a list of keyTermsElements and returns rows. That should be more testable than having to create a bunch of xml files.

johnml1135 · 2023-11-28T20:57:53Z

src/SIL.Machine/Corpora/ParatextKeyTermsCorpus.cs line 61 at r1 (raw file):

Previously, johnml1135 (John Lambert) wrote…

There should be a nice set of 20 or so tests to check this. I would recommend breaking out the parsing section as a separate function that takes a list of keyTermsElements and returns rows. That should be more testable than having to create a bunch of xml files.

The 20 or so tests would be the official documentation of the logic.

johnml1135 · 2023-11-28T20:58:35Z

src/SIL.Machine/Corpora/ParatextKeyTermsCorpus.cs line 61 at r1 (raw file):

Previously, johnml1135 (John Lambert) wrote…

The 20 or so tests would be the official documentation of the logic.

Or, you could have a function that just takes a single element and returns a list of glosses - that may be better.

johnml1135 · 2023-11-28T20:59:18Z

src/SIL.Machine/Corpora/ParatextKeyTermsCorpus.cs line 81 at r1 (raw file):

        }

        private static string StripParens(string termString, char left = '(', char right = ')')

This needs a comment explaining what it does and a few tests to confirm behavior.

johnml1135 · 2023-11-28T20:59:45Z

src/SIL.Machine/Corpora/ParatextKeyTermsCorpus.cs line 61 at r1 (raw file):

Previously, johnml1135 (John Lambert) wrote…

Or, you could have a function that just takes a single element and returns a list of glosses - that may be better.

And the function can be static.

johnml1135 · 2023-11-28T21:01:12Z

src/SIL.Machine.AspNetCore/Services/NmtPreprocessBuildJob.cs line 133 at r1 (raw file):

                if (
                    buildOptionsObject is not null
                    && buildOptionsObject["use_key_terms"] is not null

Using keyterms should be default. Possibly you could switch the logic? What would be the best way to do this @ddaspit?

johnml1135 · 2023-11-28T21:01:45Z

This needs more testing.

johnml1135

Reviewed 2 of 2 files at r1, all commit messages.
Reviewable status: all files reviewed, 4 unresolved discussions (waiting on @ddaspit and @Enkidu93)

src/SIL.Machine/Corpora/ParatextKeyTermsCorpus.cs line 54 at r1 (raw file):

                foreach (XElement element in keyTermsElements)
                {
                    if ((element.Element("Category")?.Value ?? "") != "PN")

This logic should be documented in a wiki.

Enkidu93 · 2023-11-29T13:50:15Z

I'll go ahead and add testing and documentation. The logic in the key terms corpus is taken from SILNLP which I'm realizing is not really well-tested itself (and understandably so).

ddaspit

We want this functionality for all engine types, including SMT, so the code to create a ParatextKeyTermsCorpus should be moved to CorpusService.CreateTextCorpus. Once this functionality is no longer specific to NMT, it is no longer appropriate to use build options to configure this. Build options are engine-specific options. A new property should be added to StartBuildRequest for the StartBuild gRPC endpoint to toggle this functionality.

Reviewed 2 of 2 files at r1, all commit messages.
Reviewable status: all files reviewed, 4 unresolved discussions (waiting on @Enkidu93)

Enkidu93

Logic has been moved.

Reviewable status: 0 of 10 files reviewed, 4 unresolved discussions (waiting on @ddaspit and @johnml1135)

src/SIL.Machine/Corpora/ParatextKeyTermsCorpus.cs line 54 at r1 (raw file):

Previously, johnml1135 (John Lambert) wrote…

This logic should be documented in a wiki.

This logic has been removed since we're using TermRenderings.

src/SIL.Machine/Corpora/ParatextKeyTermsCorpus.cs line 61 at r1 (raw file):

Previously, johnml1135 (John Lambert) wrote…

And the function can be static.

Done.

src/SIL.Machine/Corpora/ParatextKeyTermsCorpus.cs line 81 at r1 (raw file):

Previously, johnml1135 (John Lambert) wrote…

This needs a comment explaining what it does and a few tests to confirm behavior.

Done.

src/SIL.Machine.AspNetCore/Services/NmtPreprocessBuildJob.cs line 133 at r1 (raw file):

Previously, johnml1135 (John Lambert) wrote…

Using keyterms should be default. Possibly you could switch the logic? What would be the best way to do this @ddaspit?

OK, it's easy enough to make that the default; I just didn't know that it was supposed to be a default feature. I've left it as-is. Please confirm that we'd want this to be the default behavior and I can make that change.

Enkidu93 · 2023-12-01T15:16:17Z

The added testing also fixes #144 .

johnml1135 · 2023-12-01T16:12:19Z

src/SIL.Machine.AspNetCore/Services/CorpusService.cs line 23 at r2 (raw file):

    }

    public ParatextKeyTermsCorpus? CreateKeyTermsCorpus(IReadOnlyList<CorpusFile> files)

This appears to not have code coverage: https://app.codecov.io/gh/sillsdev/machine/pull/143?src=pr&el=h1&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=sillsdev

johnml1135 · 2023-12-01T16:14:26Z

src/SIL.Machine.AspNetCore/Services/NmtPreprocessBuildJob.cs line 133 at r1 (raw file):

Previously, Enkidu93 (Eli C. Lowry) wrote…

OK, it's easy enough to make that the default; I just didn't know that it was supposed to be a default feature. I've left it as-is. Please confirm that we'd want this to be the default behavior and I can make that change.

@ddaspit - do you have any objection to making it default?

johnml1135

Reviewed 10 of 10 files at r2, all commit messages.
Reviewable status: all files reviewed, 2 unresolved discussions (waiting on @ddaspit and @Enkidu93)

Enkidu93 · 2023-12-01T16:46:45Z

src/SIL.Machine.AspNetCore/Services/CorpusService.cs line 23 at r2 (raw file):

Previously, johnml1135 (John Lambert) wrote…

This appears to not have code coverage: https://app.codecov.io/gh/sillsdev/machine/pull/143?src=pr&el=h1&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=sillsdev

Thank you! Previously, this file had 0% coverage. The generic CreateTextCorpus gets tested in the NmtPreprocessBuildJobTests. It would be a bit forced and odd to test this there as well. I could also make it its own CorpusServiceTests but there's just so little to test. This is tested in the Serval Paratext E2E test. If you'd really like me to, I can incorporate a test now for this. It may be worthwhile to open up a separate issue that involves systematically going through the existing code coverage reports and trying to improve our coverage.

ddaspit

I apologize, but I am asking you to change the design again. See my comments below.

Reviewed 10 of 10 files at r2, all commit messages.
Reviewable status: all files reviewed, 8 unresolved discussions (waiting on @Enkidu93 and @johnml1135)

src/SIL.Machine/Corpora/ParatextKeyTermsCorpus.cs line 15 at r2 (raw file):

        public string BiblicalTermsType { get; set; }

        public ParatextKeyTermsCorpus(string projectDir)

I would rename this to fileName.

src/SIL.Machine/Corpora/ParatextKeyTermsCorpus.cs line 23 at r2 (raw file):

                if (termsFileEntry is null)
                {
                    throw new ArgumentException(

Instead of throwing an exception, we should just return an empty corpus.

src/SIL.Machine/Corpora/ParatextKeyTermsCorpus.cs line 54 at r2 (raw file):

                foreach (XElement element in termsElements)
                {
                    string id = element.Attribute("Id").Value;

We need some way to filter by category. This means that we will need to pull in the Biblical terms list.

src/SIL.Machine/Corpora/ParatextKeyTermsCorpus.cs line 56 at r2 (raw file):

                    string id = element.Attribute("Id").Value;
                    id = id.Replace("\n", "&#xA");
                    string gloss = element.Element("Renderings").Value;

I would rename this to rendering since it could be confused with the term gloss.

src/SIL.Machine/Corpora/ParatextKeyTermsCorpus.cs line 60 at r2 (raw file):

                    rows.Add(new TextRow("KeyTerms", id) { Segment = glosses });
                }
                IText text = new MemoryText("KeyTerms", rows);

If the text id is the Biblical terms list, then we won't need to add an extra check to see if the source and target are using the same list.

If we do this, then we don't need to perform the special check to see if the lists match, so we can treat this just like any other corpus. I think we should change CorpusService.CreateTextCorpus to return a dictionary of corpora, which was one of the options we discussed previously. The key would be an enum that defines the type of data in the corpus, i.e. Text and Terms. You can match up the source and target corpora using the enum values. You can also use the enum value to remove the key terms if they are disabled.

src/SIL.Machine.AspNetCore/Services/NmtPreprocessBuildJob.cs line 88 at r2 (raw file):

                    buildOptionsObject is not null
                    && buildOptionsObject["use_key_terms"] is not null
                    && buildOptionsObject["use_key_terms"]!.ToString() == "true"

I think this can be cast to a bool.

Enkidu93 · 2023-12-01T18:14:40Z

OK 😵‍💫

Enkidu93

Sorry for the delay - got side-tracked. Done.

Reviewable status: 4 of 11 files reviewed, 8 unresolved discussions (waiting on @ddaspit and @johnml1135)

src/SIL.Machine/Corpora/ParatextKeyTermsCorpus.cs line 15 at r2 (raw file):

Previously, ddaspit (Damien Daspit) wrote…

I would rename this to fileName.

Done. Would you like me to rename "projectDir" -> "fileName" in ParatextTextCorpus as well then? It was already inconsistent language, but "projectDir" seemed the more appropriate of the two.

src/SIL.Machine/Corpora/ParatextKeyTermsCorpus.cs line 23 at r2 (raw file):

Previously, ddaspit (Damien Daspit) wrote…

Instead of throwing an exception, we should just return an empty corpus.

Done.

src/SIL.Machine/Corpora/ParatextKeyTermsCorpus.cs line 54 at r2 (raw file):

Previously, ddaspit (Damien Daspit) wrote…

We need some way to filter by category. This means that we will need to pull in the Biblical terms list.

Done.

src/SIL.Machine/Corpora/ParatextKeyTermsCorpus.cs line 56 at r2 (raw file):

Previously, ddaspit (Damien Daspit) wrote…

I would rename this to rendering since it could be confused with the term gloss.

Done.

src/SIL.Machine/Corpora/ParatextKeyTermsCorpus.cs line 60 at r2 (raw file):

Previously, ddaspit (Damien Daspit) wrote…

If the text id is the Biblical terms list, then we won't need to add an extra check to see if the source and target are using the same list.

If we do this, then we don't need to perform the special check to see if the lists match, so we can treat this just like any other corpus. I think we should change CorpusService.CreateTextCorpus to return a dictionary of corpora, which was one of the options we discussed previously. The key would be an enum that defines the type of data in the corpus, i.e. Text and Terms. You can match up the source and target corpora using the enum values. You can also use the enum value to remove the key terms if they are disabled.

Done.

src/SIL.Machine.AspNetCore/Services/NmtPreprocessBuildJob.cs line 88 at r2 (raw file):

Previously, ddaspit (Damien Daspit) wrote…

I think this can be cast to a bool.

Done.

johnml1135 · 2023-12-01T21:33:09Z

src/SIL.Machine.AspNetCore/Services/CorpusService.cs line 23 at r2 (raw file):

Previously, Enkidu93 (Eli C. Lowry) wrote…

Thank you! Previously, this file had 0% coverage. The generic CreateTextCorpus gets tested in the NmtPreprocessBuildJobTests. It would be a bit forced and odd to test this there as well. I could also make it its own CorpusServiceTests but there's just so little to test. This is tested in the Serval Paratext E2E test. If you'd really like me to, I can incorporate a test now for this. It may be worthwhile to open up a separate issue that involves systematically going through the existing code coverage reports and trying to improve our coverage.

If it is tested in E2E testing (and no logic of note), then I am ok ignoring it.

johnml1135

Reviewed 7 of 7 files at r3, all commit messages.
Reviewable status: all files reviewed, 7 unresolved discussions (waiting on @ddaspit and @Enkidu93)

Enkidu93 · 2023-12-01T21:37:48Z

src/SIL.Machine.AspNetCore/Services/CorpusService.cs line 23 at r2 (raw file):
Previously, Enkidu93 (Eli C. Lowry) wrote…

If it is tested in E2E testing (and no logic of note), then I am ok ignoring it.

OK, cool. And it is slightly more covered now anyways after the re-redesign.

ddaspit

Reviewed 6 of 7 files at r3, all commit messages.
Reviewable status: all files reviewed, 3 unresolved discussions (waiting on @Enkidu93)

src/SIL.Machine/Corpora/ParatextKeyTermsCorpus.cs line 15 at r2 (raw file):

Previously, Enkidu93 (Eli C. Lowry) wrote…

Done. Would you like me to rename "projectDir" -> "fileName" in ParatextTextCorpus as well then? It was already inconsistent language, but "projectDir" seemed the more appropriate of the two.

I think you are referring to ParatextBackupTextCorpus. That class already uses fileName.

src/SIL.Machine/Corpora/ParatextKeyTermsCorpus.cs line 54 at r2 (raw file):

Previously, Enkidu93 (Eli C. Lowry) wrote…

Done.

We still need to deal with the case where the project is using one of the predefined Biblical terms lists. I think that means we need to include the predefined XML files as embedded resources in the SIL.Machine assembly. You can see an example of this with the embedded usfm.sty file. We can talk next week, if you want more details.

src/SIL.Machine/Corpora/ParatextKeyTermsCorpus.cs line 74 at r3 (raw file):

                    id = id.Replace("\n", "&#xA");
                    string rendering = element.Element("Renderings").Value;
                    IReadOnlyList<string> glosses = GetRenderings(rendering);

You missed this variable name.

ddaspit

Reviewed 1 of 1 files at r10, 1 of 1 files at r11, all commit messages.
Reviewable status: all files reviewed, 2 unresolved discussions (waiting on @Enkidu93)

src/SIL.Machine/Corpora/ParatextBackupTermsCorpus.cs line 80 at r10 (raw file):

Previously, ddaspit (Damien Daspit) wrote…

This is potentially expensive, since it is searching through the whole terms list XML for every term rendering. It would probably be better to create a dictionary from the terms list that maps the term id to the category.

You should use TryGetValue, so you only perform one dictionary lookup.

Enkidu93 · 2023-12-05T20:36:20Z

src/SIL.Machine/Corpora/ParatextBackupTermsCorpus.cs line 80 at r10 (raw file):

Previously, ddaspit (Damien Daspit) wrote…

You should use TryGetValue, so you only perform one dictionary lookup.

Still not passing a test - checking the logic again now.

Enkidu93

Reviewable status: 23 of 26 files reviewed, 2 unresolved discussions (waiting on @ddaspit and @johnml1135)

src/SIL.Machine/Corpora/ParatextBackupTermsCorpus.cs line 49 at r7 (raw file):

Previously, ddaspit (Damien Daspit) wrote…

For a project terms list, you just need to check if the list type is Project and the project id matches the Name field in the project settings.

Done.

src/SIL.Machine/Corpora/ParatextBackupTermsCorpus.cs line 84 at r7 (raw file):

Previously, ddaspit (Damien Daspit) wrote…

Yes, that looks correct.

Cool.

src/SIL.Machine/Corpora/ParatextBackupTermsCorpus.cs line 80 at r10 (raw file):

Previously, Enkidu93 (Eli C. Lowry) wrote…

Still not passing a test - checking the logic again now.

Fixed the test data.

johnml1135

Reviewed 3 of 3 files at r12, all commit messages.
Reviewable status: all files reviewed, 2 unresolved discussions (waiting on @ddaspit)

ddaspit

Reviewed 3 of 3 files at r12, all commit messages.
Reviewable status: all files reviewed, 2 unresolved discussions (waiting on @Enkidu93)

src/SIL.Machine/Corpora/ParatextBackupTermsCorpus.cs line 61 at r12 (raw file):

                    {
                        biblicalTermsDoc = XDocument.Load(keyTermsFile);
                        termIdToCategoryDictionary = biblicalTermsDoc

Can you move this code to a static method so it isn't repeated?

src/SIL.Machine/Corpora/ParatextBackupTermsCorpus.cs line 69 at r12 (raw file):

                else
                {
                    if (

This can be an else if statement.

Enkidu93

Reviewable status: all files reviewed, 2 unresolved discussions (waiting on @ddaspit)

src/SIL.Machine/Corpora/ParatextBackupTermsCorpus.cs line 61 at r12 (raw file):

Previously, ddaspit (Damien Daspit) wrote…

Can you move this code to a static method so it isn't repeated?

Done.

src/SIL.Machine/Corpora/ParatextBackupTermsCorpus.cs line 69 at r12 (raw file):

Previously, ddaspit (Damien Daspit) wrote…

This can be an else if statement.

Done.

johnml1135

Reviewed 1 of 1 files at r13, all commit messages.
Reviewable status: all files reviewed, 2 unresolved discussions (waiting on @ddaspit)

ddaspit

Good job sticking with this PR.

Reviewed 1 of 1 files at r13, all commit messages.
Reviewable status: complete! all files reviewed, all discussions resolved (waiting on @Enkidu93)

*Testing *Moving logic (as possible) out of the build job *Added logic to SMT *Stuck with buildOptions for configuring (after further conversation) Issues - Not as much abstraction as I'd like between the CorpusService, *BuildJobs, etc.

Enkidu93 · 2023-12-06T17:59:26Z

And thank you to you for being persistent in your reviewing.

Enkidu93 requested review from ddaspit and johnml1135 November 28, 2023 20:28

Enkidu93 mentioned this pull request Nov 28, 2023

Native key term support sillsdev/serval#226

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Enkidu93 added 18 commits December 6, 2023 12:39

Draft key terms corpus

442bc33

Check for key terms and write aligned rows during preprocessing

feb8232

Working native key terms functionality

abd9b61

Working key terms solution including:

ba0155a

*Testing *Moving logic (as possible) out of the build job *Added logic to SMT *Stuck with buildOptions for configuring (after further conversation) Issues - Not as much abstraction as I'd like between the CorpusService, *BuildJobs, etc.

Redesign as per PR review

d120c54

Minor fixes from PR review

17a82ab

Change SMT default behavior as well

b359e5d

Fix dictionary logic

c13bb3f

More PR reviews fixes

8529755

Added testing

d6314c6

Added testing

a883329

More PR review fixes

ce3410d

Fix key term ids logic

45a0f15

Remove null check

8eee29e

Precompute dictionary

755902d

Fix terms logic

682c56c

Fixed test data

37b1766

Move to statuc method; else, if to else if

1ab2ad1

Enkidu93 force-pushed the key_terms_support branch from dc85c31 to 1ab2ad1 Compare December 6, 2023 17:39

Enkidu93 merged commit f7ea2e0 into master Dec 6, 2023

Enkidu93 deleted the key_terms_support branch December 6, 2023 17:56

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Key terms support #143

Key terms support #143

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Enkidu93 commented Nov 28, 2023 •

edited by ddaspit

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