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BABAPPAlign v1.1.3

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@sinhakrishnendu sinhakrishnendu released this 02 Jan 05:14
· 22 commits to main since this release
v1.1.3
e65b659

Patch release (no algorithmic changes)

Fixed

  • Enforced mandatory explicit specification of the neural scoring model (--model) with no silent fallback.
  • Restored correct progressive profile construction, ensuring all input sequences are retained in the final alignment.
  • Ensured scoring model validation occurs before any embedding inference for improved correctness and reproducibility.

Notes

  • The alignment algorithm, neural scoring model, and numerical behavior are unchanged.
  • This release resolves a packaging-related regression introduced during CLI enforcement.
  • Version bump issued to ensure immutable source distribution compatibility with downstream package managers (e.g. Bioconda).
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