Documentation is broken #384
Description
This is what is displayed on the site
Not a valid plugin: WARN Using local manifest /tmp/tmpmqks6kie/pixi.toml rather than /home/runner/work/snakemake-plugin-catalog/snakemake-plugin-catalog/pixi.toml from environment variable `PIXI_PROJECT_MANIFEST`
✨ Pixi task (extract-info): python -c "from snakemake_interface_executor_plugins.registry import ExecutorPluginRegistry; plugin = ExecutorPluginRegistry().get_plugin('slurm'); import json; fmt_type = lambda thetype: thetype.__name__ if thetype is not None else None; fmt_setting_item = lambda key, value: (key, fmt_type(value)) if key == 'type' else (key, value); fmt_setting = lambda setting: dict(map(lambda item: fmt_setting_item(*item), setting.items())); print(json.dumps(list(map(fmt_setting, plugin.get_settings_info()))))"
Traceback (most recent call last):
File "<string>", line 1, in <module>
from snakemake_interface_executor_plugins.registry import ExecutorPluginRegistry; plugin = ExecutorPluginRegistry().get_plugin('slurm'); import json; fmt_type = lambda thetype: thetype.__name__ if thetype is not None else None; fmt_setting_item = lambda key, value: (key, fmt_type(value)) if key == 'type' else (key, value); fmt_setting = lambda setting: dict(map(lambda item: fmt_setting_item(*item), setting.items())); print(json.dumps(list(map(fmt_setting, plugin.get_settings_info()))))
~~~~~~~~~~~~~~~~~~~~~~^^
File "/tmp/tmpmqks6kie/.pixi/envs/default/lib/python3.14/site-packages/snakemake_interface_common/plugin_registry/__init__.py", line 40, in __init__
self.collect_plugins()
~~~~~~~~~~~~~~~~~~~~^^
File "/tmp/tmpmqks6kie/.pixi/envs/default/lib/python3.14/site-packages/snakemake_interface_executor_plugins/registry/__init__.py", line 63, in collect_plugins
super().collect_plugins()
~~~~~~~~~~~~~~~~~~~~~~~^^
File "/tmp/tmpmqks6kie/.pixi/envs/default/lib/python3.14/site-packages/snakemake_interface_common/plugin_registry/__init__.py", line 97, in collect_plugins
module = importlib.import_module(moduleinfo.name)
File "/tmp/tmpmqks6kie/.pixi/envs/default/lib/python3.14/importlib/__init__.py", line 88, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "<frozen importlib._bootstrap>", line 1398, in _gcd_import
File "<frozen importlib._bootstrap>", line 1371, in _find_and_load
File "<frozen importlib._bootstrap>", line 1342, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 938, in _load_unlocked
File "<frozen importlib._bootstrap_external>", line 762, in exec_module
File "<frozen importlib._bootstrap>", line 491, in _call_with_frames_removed
File "/tmp/tmpmqks6kie/.pixi/envs/default/lib/python3.14/site-packages/snakemake_executor_plugin_slurm/__init__.py", line 115, in <module>
class ExecutorSettings(ExecutorSettingsBase):
...<158 lines>...
validate_executor_settings(self)
File "/tmp/tmpmqks6kie/.pixi/envs/default/lib/python3.14/site-packages/snakemake_executor_plugin_slurm/__init__.py", line 235, in ExecutorSettings
"help": _get_status_command_help(),
~~~~~~~~~~~~~~~~~~~~~~~~^^
File "/tmp/tmpmqks6kie/.pixi/envs/default/lib/python3.14/site-packages/snakemake_executor_plugin_slurm/__init__.py", line 76, in _get_status_command_help
default_cmd = _get_status_command_default()
File "/tmp/tmpmqks6kie/.pixi/envs/default/lib/python3.14/site-packages/snakemake_executor_plugin_slurm/__init__.py", line 63, in _get_status_command_default
raise WorkflowError(
...<3 lines>...
)
snakemake_interface_common.exceptions.WorkflowError: Neither 'sacct' nor 'squeue' commands are available on this system. At least one of these commands is required for job status queries.
Please file a corresponding issue in the plugin's `repository <https://github.com/snakemake/snakemake-executor-plugin-slurm>`__ (if there is none yet).