Releases: snakemake/snakemake-report-plugin-nanopub
Releases · snakemake/snakemake-report-plugin-nanopub
v0.3.1
0.3.1 (2026-06-12)
Bug Fixes
- added nanopub hashtag to the announcement message (70916c3)
- added nanopub hashtag to the announcement message (c7125ae)
- PLugin -> Plugin (cfade62)
- PLugin -> Plugin (42a75a3)
- pytest version minimal 9.0.3 (b033f9b)
- pytest version minimal 9.0.3, due security issue - pytest through 9.0.2 on UNIX relies on directories with the '/tmp/pytest-of-{user}' name pattern, which allows local users to cause a denial of service or possibly gain privileges. (171000e)
v0.3.0
v0.2.0
0.2.0 (2026-05-05)
Features
- added pyaml deps (a40892c)
Bug Fixes
- catching additional (559bea1)
- formatting (e054733)
- formatting & linting (721bd9d)
- now conda env versions are present, so are wrapper versions (d11ce70)
- rule info from job stats to rule metadata (5302862)
- stable in- output extraction (5362b47)
- test string (3ffc08d)
- typos (d7db6ab)
- typos (962a39a)
- wrapper version, in- and output are stored, no job stats anymore - tests adapted (d5dc802)
v0.1.0
0.1.0 (2026-04-21)
Features
- added announcemnet CI plus logo image (8124fc7)
- added basic code (automatic scaffold by poetry) (a81a92f)
- added basic test code (auto generated by poetry (5858e76)
- added cli script for plotting dependency graphs (d887696)
- added coverage tests for pixi (21488dc)
- added depencencies (179d86f)
- added example knowledge graph image (792f6db)
- cli now considering workflow metadata (2ad0f1b)
- coded skeleton - untested (aa4f0ec)
- consider testing the graph file, too (cfc2496)
- documenting --workflow-configuration-id (5e60c84)
- first working version (75d6821)
- improved balance between published quads and limits (db8d18b)
- included nanopub py as a dependency (37ae247)
- shrinking content size by stripping comments (a4089cf)
- signedby attribute was added (1a7511c)
- stabilized plotting (7bab5c1)
- version 1 (9bb126e)
- working version (c85ecd7)
- working version - needs polishing (0ba4c51)
- working version - not yet structured (7ef3899)
Bug Fixes
- added pixi information to toml files (22b70e6)
- attempt 2 - should fail in tests, as no nanopub-py is installed, waiting for the new version (0b85a68)
- bumped python dep in CI to 3.12 for compatibility checks (a6c4f0e)
- bumped snakemake version to something recent (136e003)
- corrected description handling (c747028)
- docstring typo (ca1f853)
- fixes the pixi CI issue - hopefully (a426c98)
- formatting (b65d1a0)
- formatting (dbdd216)
- formatting (2f62d66)
- formatting (e12b70c)
- formatting (4dd16a4)
- formatting (e4004ba)
- formatting (e99f991)
- formatting (be4dbf2)
- linint - removed unused import (30f4dd2)
- linting (54148e8)
- merge conflict (d793fd4)
- name (696215c)
- nanopub-py is a pypi not a conda dep (a291029)
- relaxing system requirements to work on cluster envs (04c4276)
- removed unused import (405caf0)
- reverting to snakemake's global logger, added comments (a245dc3)
- somewhat improved string handling to comply with all tests (716deb1)
- spelling (55f4a49)
- stripping html tags from workflow description (8e49dce)
- switching to 'Dataset() from 'ConjunctiveGraph()' to avoid deprecation warnings (1604bfb)
- test dependencies (e32da0f)
- testing (c07a189)
- typo (66b19a2)