perf: autobump bio/gatk/printreadsspark#4541
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🤖 I have created a release *beep* *boop* --- ## [7.6.0](v7.5.0...v7.6.0) (2025-09-26) ### Features * pyEffGenomeSize ([#4452](#4452)) ([2ed2ae2](2ed2ae2)) ### Bug Fixes * more verbose docs for VEP usage ([#4608](#4608)) ([168b48b](168b48b)) ### Performance Improvements * autobump bio/bazam ([#4493](#4493)) ([9570a5f](9570a5f)) * autobump bio/bbtools ([#4492](#4492)) ([64f3ecf](64f3ecf)) * autobump bio/bcftools/call ([#4487](#4487)) ([6368005](6368005)) * autobump bio/bcftools/concat ([#4490](#4490)) ([9e5b7b0](9e5b7b0)) * autobump bio/bcftools/filter ([#4500](#4500)) ([0d53966](0d53966)) * autobump bio/bcftools/index ([#4494](#4494)) ([9ae8bfb](9ae8bfb)) * autobump bio/bcftools/merge ([#4484](#4484)) ([7edd4d4](7edd4d4)) * autobump bio/bcftools/mpileup ([#4498](#4498)) ([b3ded18](b3ded18)) * autobump bio/bcftools/norm ([#4486](#4486)) ([6bee2de](6bee2de)) * autobump bio/bcftools/reheader ([#4491](#4491)) ([24b7c38](24b7c38)) * autobump bio/bcftools/sort ([#4495](#4495)) ([772201e](772201e)) * autobump bio/bcftools/stats ([#4485](#4485)) ([4d8fcbf](4d8fcbf)) * autobump bio/bcftools/view ([#4482](#4482)) ([4368cfe](4368cfe)) * autobump bio/bellerophon ([#4488](#4488)) ([2e3c18f](2e3c18f)) * autobump bio/bowtie2/align ([#4497](#4497)) ([1a11b19](1a11b19)) * autobump bio/bustools/sort ([#4483](#4483)) ([923c73b](923c73b)) * autobump bio/bwa-mem2/mem ([#4496](#4496)) ([9e68419](9e68419)) * autobump bio/bwa/mem ([#4489](#4489)) ([57418a1](57418a1)) * autobump bio/bwameth/memx ([#4499](#4499)) ([77d8897](77d8897)) * autobump bio/delly ([#4502](#4502)) ([1bbdf4a](1bbdf4a)) * autobump bio/fastqc ([#4503](#4503)) ([377bf08](377bf08)) * autobump bio/fgbio/annotatebamwithumis ([#4507](#4507)) ([8d9b283](8d9b283)) * autobump bio/fgbio/collectduplexseqmetrics ([#4506](#4506)) ([3c61f67](3c61f67)) * autobump bio/filtlong ([#4505](#4505)) ([cd3d276](cd3d276)) * autobump bio/freebayes ([#4504](#4504)) ([92ad026](92ad026)) * autobump bio/gatk/applybqsr ([#4522](#4522)) ([a8d0a72](a8d0a72)) * autobump bio/gatk/applybqsrspark ([#4546](#4546)) ([5fc9cd5](5fc9cd5)) * autobump bio/gatk/applyvqsr ([#4535](#4535)) ([aa13bae](aa13bae)) * autobump bio/gatk/baserecalibrator ([#4534](#4534)) ([9262a33](9262a33)) * autobump bio/gatk/baserecalibratorspark ([#4514](#4514)) ([a5b751f](a5b751f)) * autobump bio/gatk/calculatecontamination ([#4537](#4537)) ([a4b2bde](a4b2bde)) * autobump bio/gatk/callcopyratiosegments ([#4531](#4531)) ([0eef601](0eef601)) * autobump bio/gatk/cleansam ([#4512](#4512)) ([993eb62](993eb62)) * autobump bio/gatk/collectalleliccounts ([#4510](#4510)) ([a7720c7](a7720c7)) * autobump bio/gatk/collectreadcounts ([#4516](#4516)) ([12be359](12be359)) * autobump bio/gatk/combinegvcfs ([#4508](#4508)) ([2914607](2914607)) * autobump bio/gatk/denoisereadcounts ([#4515](#4515)) ([3dbc217](3dbc217)) * autobump bio/gatk/depthofcoverage ([#4542](#4542)) ([f7f412e](f7f412e)) * autobump bio/gatk/estimatelibrarycomplexity ([#4532](#4532)) ([893f523](893f523)) * autobump bio/gatk/filtermutectcalls ([#4544](#4544)) ([7e74f7b](7e74f7b)) * autobump bio/gatk/genomicsdbimport ([#4526](#4526)) ([659a78d](659a78d)) * autobump bio/gatk/genotypegvcfs ([#4530](#4530)) ([5b3595c](5b3595c)) * autobump bio/gatk/getpileupsummaries ([#4513](#4513)) ([e3679c0](e3679c0)) * autobump bio/gatk/haplotypecaller ([#4533](#4533)) ([33817fc](33817fc)) * autobump bio/gatk/intervallisttobed ([#4545](#4545)) ([1af0200](1af0200)) * autobump bio/gatk/learnreadorientationmodel ([#4523](#4523)) ([5aa50d8](5aa50d8)) * autobump bio/gatk/leftalignandtrimvariants ([#4539](#4539)) ([2abc49b](2abc49b)) * autobump bio/gatk/markduplicatesspark ([#4518](#4518)) ([3498800](3498800)) * autobump bio/gatk/modelsegments ([#4524](#4524)) ([2121b63](2121b63)) * autobump bio/gatk/mutect ([#4536](#4536)) ([89843de](89843de)) * autobump bio/gatk/printreadsspark ([#4541](#4541)) ([376e04c](376e04c)) * autobump bio/gatk/scatterintervalsbyns ([#4527](#4527)) ([9548d58](9548d58)) * autobump bio/gatk/selectvariants ([#4543](#4543)) ([84438ce](84438ce)) * autobump bio/gatk/splitintervals ([#4525](#4525)) ([bfab4c5](bfab4c5)) * autobump bio/gatk/splitncigarreads ([#4547](#4547)) ([4d982e3](4d982e3)) * autobump bio/gatk/variantannotator ([#4511](#4511)) ([7611cbc](7611cbc)) * autobump bio/gatk/varianteval ([#4520](#4520)) ([3af8bd8](3af8bd8)) * autobump bio/gatk/variantfiltration ([#4540](#4540)) ([2f775ab](2f775ab)) * autobump bio/gatk/variantrecalibrator ([#4528](#4528)) ([0c5fdfa](0c5fdfa)) * autobump bio/gatk/variantstotable ([#4529](#4529)) ([d4082c4](d4082c4)) * autobump bio/gatk3/baserecalibrator ([#4538](#4538)) ([d7cbd33](d7cbd33)) * autobump bio/gatk3/indelrealigner ([#4519](#4519)) ([288a4f5](288a4f5)) * autobump bio/gatk3/printreads ([#4521](#4521)) ([6e42283](6e42283)) * autobump bio/gatk3/realignertargetcreator ([#4509](#4509)) ([e9fea51](e9fea51)) * autobump bio/gseapy/gsea ([#4517](#4517)) ([47af87d](47af87d)) * autobump bio/igv-reports ([#4610](#4610)) ([f075f1f](f075f1f)) * autobump bio/jannovar ([#4548](#4548)) ([2a2b8ee](2a2b8ee)) * autobump bio/megahit ([#4549](#4549)) ([8c50cd2](8c50cd2)) * autobump bio/meryl/count ([#4551](#4551)) ([fd90a1b](fd90a1b)) * autobump bio/minimap2/aligner ([#4552](#4552)) ([556192b](556192b)) * autobump bio/multiqc ([#4550](#4550)) ([171e7d3](171e7d3)) * autobump bio/ngsbits/sampleancestry ([#4612](#4612)) ([c71712c](c71712c)) * autobump bio/ngsbits/samplesimilarity ([#4611](#4611)) ([1077a75](1077a75)) * autobump bio/nonpareil/infer ([#4554](#4554)) ([5bd4ffb](5bd4ffb)) * autobump bio/open-cravat/module ([#4556](#4556)) ([2f268b4](2f268b4)) * autobump bio/open-cravat/run ([#4555](#4555)) ([afd632e](afd632e)) * autobump bio/picard/addorreplacereadgroups ([#4561](#4561)) ([cedffe4](cedffe4)) * autobump bio/picard/bedtointervallist ([#4571](#4571)) ([a288fa7](a288fa7)) * autobump bio/picard/collectalignmentsummarymetrics ([#4563](#4563)) ([2ec8ce4](2ec8ce4)) * autobump bio/picard/collectgcbiasmetrics ([#4562](#4562)) ([cc669ad](cc669ad)) * autobump bio/picard/collecthsmetrics ([#4564](#4564)) ([99dfd47](99dfd47)) * autobump bio/picard/collectinsertsizemetrics ([#4566](#4566)) ([bffe69e](bffe69e)) * autobump bio/picard/collectmultiplemetrics ([#4573](#4573)) ([ae13773](ae13773)) * autobump bio/picard/collectrnaseqmetrics ([#4565](#4565)) ([ee83008](ee83008)) * autobump bio/picard/collecttargetedpcrmetrics ([#4574](#4574)) ([44e0ab9](44e0ab9)) * autobump bio/picard/createsequencedictionary ([#4558](#4558)) ([0f94367](0f94367)) * autobump bio/picard/markduplicates ([#4567](#4567)) ([ebc4aa7](ebc4aa7)) * autobump bio/picard/mergesamfiles ([#4568](#4568)) ([232b393](232b393)) * autobump bio/picard/mergevcfs ([#4557](#4557)) ([a111470](a111470)) * autobump bio/picard/revertsam ([#4569](#4569)) ([50cb21a](50cb21a)) * autobump bio/picard/samtofastq ([#4559](#4559)) ([7569e67](7569e67)) * autobump bio/picard/sortsam ([#4570](#4570)) ([d927beb](d927beb)) * autobump bio/pretext/map ([#4572](#4572)) ([9290593](9290593)) * autobump bio/pyfaidx ([#4560](#4560)) ([effb359](effb359)) * autobump bio/qualimap/bamqc ([#4576](#4576)) ([453a04a](453a04a)) * autobump bio/qualimap/rnaseq ([#4575](#4575)) ([dc03a69](dc03a69)) * autobump bio/rasusa ([#4613](#4613)) ([42ed28d](42ed28d)) * autobump bio/reference/ensembl-mysql-table ([#4577](#4577)) ([f017654](f017654)) * autobump bio/samshee ([#4589](#4589)) ([33d74fc](33d74fc)) * autobump bio/samtools/calmd ([#4582](#4582)) ([26ea0ae](26ea0ae)) * autobump bio/samtools/collate ([#4594](#4594)) ([b092d01](b092d01)) * autobump bio/samtools/depth ([#4599](#4599)) ([7f2a9f2](7f2a9f2)) * autobump bio/samtools/faidx ([#4590](#4590)) ([4f999d5](4f999d5)) * autobump bio/samtools/fastx ([#4595](#4595)) ([150debb](150debb)) * autobump bio/samtools/fixmate ([#4592](#4592)) ([7ed1fd9](7ed1fd9)) * autobump bio/samtools/flagstat ([#4584](#4584)) ([7f4af83](7f4af83)) * autobump bio/samtools/idxstats ([#4596](#4596)) ([a107510](a107510)) * autobump bio/samtools/markdup ([#4598](#4598)) ([5ac1a01](5ac1a01)) * autobump bio/samtools/merge ([#4587](#4587)) ([b62ce16](b62ce16)) * autobump bio/samtools/sort ([#4593](#4593)) ([a2a968f](a2a968f)) * autobump bio/samtools/stats ([#4579](#4579)) ([ef38a14](ef38a14)) * autobump bio/samtools/view ([#4588](#4588)) ([4a58ffc](4a58ffc)) * autobump bio/seqkit ([#4591](#4591)) ([2122ac7](2122ac7)) * autobump bio/snpsift/annotate ([#4581](#4581)) ([7af8d8d](7af8d8d)) * autobump bio/snpsift/annotate ([#4614](#4614)) ([727225c](727225c)) * autobump bio/snpsift/dbnsfp ([#4585](#4585)) ([a74b97c](a74b97c)) * autobump bio/snpsift/dbnsfp ([#4618](#4618)) ([bed998a](bed998a)) * autobump bio/snpsift/genesets ([#4586](#4586)) ([1c81b83](1c81b83)) * autobump bio/snpsift/genesets ([#4615](#4615)) ([ede7158](ede7158)) * autobump bio/snpsift/gwascat ([#4597](#4597)) ([0e70bfb](0e70bfb)) * autobump bio/snpsift/gwascat ([#4617](#4617)) ([fe47429](fe47429)) * autobump bio/snpsift/varType ([#4583](#4583)) ([cc9cf02](cc9cf02)) * autobump bio/snpsift/varType ([#4616](#4616)) ([91abc6e](91abc6e)) * autobump bio/sra-tools/fasterq-dump ([#4580](#4580)) ([346e270](346e270)) * autobump bio/varscan/mpileup2indel ([#4603](#4603)) ([37cb03d](37cb03d)) * autobump bio/varscan/mpileup2snp ([#4606](#4606)) ([e60d079](e60d079)) * autobump bio/vembrane/filter ([#4602](#4602)) ([883d51a](883d51a)) * autobump bio/vembrane/filter ([#4621](#4621)) ([bc64141](bc64141)) * autobump bio/vembrane/table ([#4605](#4605)) ([0cf77fc](0cf77fc)) * autobump bio/vembrane/table ([#4620](#4620)) ([cec18de](cec18de)) * autobump bio/vep/cache ([#4619](#4619)) ([00d3de2](00d3de2)) * autobump bio/vg/giraffe ([#4601](#4601)) ([339dd65](339dd65)) * autobump utils/csvtk ([#4501](#4501)) ([4e88346](4e88346)) * autobump utils/datavzrd ([#4609](#4609)) ([2213b3c](2213b3c)) * autobump utils/miller ([#4553](#4553)) ([0a6abdc](0a6abdc)) --- This PR was generated with [Release Please](https://github.com/googleapis/release-please). See [documentation](https://github.com/googleapis/release-please#release-please).
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Automatic bump of bio/gatk/printreadsspark.