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1. fn5_pipeline fn5_pipeline Public

   Nextflow wrapper for FN5

   Nextflow 1

2. tb-predict-pipeline tb-predict-pipeline Public

   Nextflow pipeline for producing variants, mutations and effects of a specified (minos) VCF file

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3. gpas-tb-workflow gpas-tb-workflow Public

   Main TB pipeline

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4. gatekeeper_pipeline gatekeeper_pipeline Public

   Nextflow pipeline for check quality and sequence trimming

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5. lineagecalling_pipeline lineagecalling_pipeline Public

   Nextflow pipeline for lineage calling (mykrobe)

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6. competitivemapping_pipeline competitivemapping_pipeline Public

   Nextflow pipeline for determination of species

   Python