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v0.7.0

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@Dhaksnamoorthy Dhaksnamoorthy released this 15 May 16:29
· 7 commits to master since this release
  • Replaced K-means clustering in --amplicon mode and non-SNP regions with KDE-based clustering and edit-distance–based HDBSCAN.
  • Forced all loci into haplotyping mode to ensure clustering is performed, even when most reads support a single allele.
  • Added LPM tag in the VCF_SAMPLE column to report longest pure repeat motif and its copy number.
  • Updated ALT allele assignment to prioritize sequence comparison against the reference sequence instead of relying solely on allele length.
  • Improved consensus sequence generation by modifying sequence ordering:
    • WGS mode now orders sequences based on the mode of allele lengths.
    • --amplicon mode orders sequences alternately from both sides of the median allele length.