Convert DNA/RNA sequences with polarity.
(Now includes GUI)
Functions:
- Convert DNA to DNA (replication)
- Displays coding and template strand
- Convert DNA to RNA (translation)
- Displays mRNA 5' -> 3'
- Convert RNA to DNA (reverse transcription)
- Displays coding and template strand
- Convert RNA to protein (translation)
- Displays AA sequence N -> C
- Can detect start & stop codons
- Can print 1 or 3 letter abbreviations
Examples:
$ sequence.py --gui
Opens GUI
$ sequence.py TATACGATGCGCTTATGCTGACCGGTA
Sequence provided (DNA)
TATACGATGCGCTTATGCTGACCGGTA
DNA -> DNA
(No polarity given)
5’-TATACGATGCGCTTATGCTGACCGGTA-3’ (Coding strand)
3’-ATATGCTACGCGAATACGACTGGCCAT-5’ (Template strand)
DNA -> mRNA
5’-UAUACGAUGCGCUUAUGCUGACCGGUA-3’
mRNA -> Protein
N-YTMRLC_PV-C
$ sequence.py --start --stop TATACGATGCGCTTATGCTGACCGGTA
Sequence provided (DNA)
TATACGATGCGCTTATGCTGACCGGTA
DNA -> DNA
(No polarity given)
5’-TATACGATGCGCTTATGCTGACCGGTA-3’ (Coding strand)
3’-ATATGCTACGCGAATACGACTGGCCAT-5’ (Template strand)
DNA -> mRNA
5’-UAUACGAUGCGCUUAUGCUGACCGGUA-3’
mRNA -> Protein
N-MRLC-C
$ sequence.py --three ATGCGCTTATGC
Sequence provided (DNA)
ATGCGCTTATGC
DNA -> DNA
(No polarity given)
5’-ATGCGCTTATGC-3’ (Coding strand)
3’-TACGCGAATACG-5’ (Template strand)
DNA -> mRNA
5’-AUGCGCUUAUGC-3’
mRNA -> Protein
N-Met-Arg-Leu-Cys-C
$ sequence.py UAUACGAUGCGCUUAUGCUGACCGGUA
Sequence provided (RNA)
UAUACGAUGCGCUUAUGCUGACCGGUA
RNA -> DNA
(No polarity given)
5’-TATACGATGCGCTTATGCTGACCGGTA-3’ (Coding strand)
3’-ATATGCTACGCGAATACGACTGGCCAT-5’ (Template strand)
mRNA -> Protein
N-YTMRLC_PV-C
$ sequence.py --translation --start --stop UAUACGAUGCGCUUAUGCUGACCGGUA
Sequence provided (RNA)
UAUACGAUGCGCUUAUGCUGACCGGUA
mRNA -> Protein
N-MRLC-C
$ sequence.py --replication 3’-TATACGATGCGCTTATGCTGACCGGTA
Sequence provided (DNA)
3’-TATACGATGCGCTTATGCTGACCGGTA
DNA -> DNA
3’-TATACGATGCGCTTATGCTGACCGGTA-5’ (Coding strand)
5’-ATATGCTACGCGAATACGACTGGCCAT-3’ (Template strand)
$ sequence.py --template 5’-TATACGATGCGCTTATGCTGACCGGTA
Sequence provided (DNA)
5’-TATACGATGCGCTTATGCTGACCGGTA
DNA -> DNA
3’-ATATGCTACGCGAATACGACTGGCCAT-5’ (Coding strand)
5’-TATACGATGCGCTTATGCTGACCGGTA-3’ (Template strand)
DNA -> mRNA
5’-UACCGGUCAGCAUAAGCGCAUCGUAUA-3’
mRNA -> Protein
N-YRSA_AHRI-C
$ sequence.py --template --transcription --translation --stop 5’-TATACGATGCGCTTATGCTGACCGGTA
Sequence provided (DNA)
5’-TATACGATGCGCTTATGCTGACCGGTA
DNA -> mRNA
5’-UACCGGUCAGCAUAAGCGCAUCGUAUA-3’
mRNA -> Protein
N-YRSA-C