Research Radar #169

stanislavjiricek · 2026-03-13T17:04:18Z

stanislavjiricek
Mar 13, 2026
Maintainer

new neuroscience/scientific workflow ideas + threats

@stanislavjiricek · 2026-03-13T18:10:08Z

github-actions[bot]
Bot Mar 13, 2026

@stanislavjiricek ✅ ALL GOOD — 2026-03-13 (Radar Brief ready)

Research Radar Brief — Week 11, 2026

Generated 2026-03-13 | neuroflow v0.2.3 | 31 commands · 31 skills · 23 agents

Recent changes (context for gap analysis)

Most recent versions in changelog: 0.2.3, 0.2.2, 0.2.1, 0.2.0, 0.1.9

💡 New ideas (implementation candidates)

1. LLM-assisted hypothesis generation [HIGH]

LLMs can now generate and critique scientific hypotheses; could extend /ideation
📍 Suggested location: commands/ideation.md or new /hypothesis command

2. BIDS 2.0 support [MEDIUM]

BIDS 2.0 introduces new modalities and stricter validation rules
📍 Suggested location: skills/phase-data/SKILL.md — add BIDS 2.0 validation guidance

3. Automated preregistration syncing (OSF API) [MEDIUM]

OSF has a REST API; /preregistration could auto-submit instead of guiding manually
📍 Suggested location: commands/preregistration.md — add --submit flag

4. Reproducibility checks (code + data provenance) [MEDIUM]

Growing requirement from journals; DVC or DataLad integration could help
📍 Suggested location: New skills/phase-data/section or/data command extension

5. Multi-modal fusion (EEG+fMRI, EEG+eye tracking) [LOW]

Multi-modal recording is increasingly common; neuroflow currently handles modalities separately
📍 Suggested location: New /fusioncommand or extension to/data-analyze``

6. Real-time feedback loop for BCI [LOW]

Closed-loop BCI paradigms require tight latency; /tool-build could gain BCI-specific templates
📍 Suggested location: commands/tool-build.md, skills/phase-tool-build/SKILL.md

7. NotebookLM / AI note-taking integration [HIGH]

Open issue #166 — community request; could be a new agent or /notes enhancement
📍 Suggested location: agents/ or commands/notes.md

🔍 Detected capability gaps

The following research domains have sparse coverage in current commands/skills:

EEG / iEEG
fMRI
Eye tracking
ECG / Physiology
Literature / Search
Statistics / ML
Data management

⚠️ Threats / watchlist

PubMed E-utilities API rate limits

NCBI enforces 3 req/s without API key, 10/s with key; bulk /search runs may hit limits
Mitigation: Add retry with backoff in scholar agent; surface API-key prompt in /setup

bioRxiv MCP server availability

The paper-search-mcp-nodejs package is a community package; no SLA
Mitigation: Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

Claude Code plugin API changes

Anthropic may change plugin format, hook events, or skill invocation between versions
Mitigation: Pin plugin version in .claude-plugin/plugin.json; watch Anthropic changelog

Markdown linting strictness (mkdocs-material)

mkdocs build --strict fails on warnings; new docs may break CI if not checked locally
Mitigation: Add a pre-commit hook or local mkdocs build --strict alias in contributing docs

📋 Proposed backlog entries

These are proposals only — no PRs will be opened by this workflow.

[feature] LLM-assisted hypothesis generation → commands/ideation.md or new /hypothesis command
[feature] NotebookLM / AI note-taking integration → agents/ or commands/notes.md
[resilience] Add retry with backoff in scholar agent; surface API-key prompt in /setup
[resilience] Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

How this report is generated

This radar brief is generated deterministically from the repo's own content:
commands, skills, agents, and the README changelog. It does not make external web requests. Web-sourced intel can be added later by wiring an MCP search server (PubMed / bioRxiv are already configured in .claude-plugin/plugin.json).

0 replies

@stanislavjiricek · 2026-03-13T20:05:01Z

github-actions[bot]
Bot Mar 13, 2026

@stanislavjiricek ✅ ALL GOOD — 2026-03-13 (Radar Brief ready)

Research Radar Brief — Week 11, 2026

Generated 2026-03-13 | neuroflow v0.2.3 | 31 commands · 31 skills · 23 agents

Recent changes (context for gap analysis)

Most recent versions in changelog: 0.2.3, 0.2.2, 0.2.1, 0.2.0, 0.1.9

💡 New ideas (implementation candidates)

1. LLM-assisted hypothesis generation [HIGH]

LLMs can now generate and critique scientific hypotheses; could extend /ideation
📍 Suggested location: commands/ideation.md or new /hypothesis command

2. BIDS 2.0 support [MEDIUM]

BIDS 2.0 introduces new modalities and stricter validation rules
📍 Suggested location: skills/phase-data/SKILL.md — add BIDS 2.0 validation guidance

3. Automated preregistration syncing (OSF API) [MEDIUM]

OSF has a REST API; /preregistration could auto-submit instead of guiding manually
📍 Suggested location: commands/preregistration.md — add --submit flag

4. Reproducibility checks (code + data provenance) [MEDIUM]

Growing requirement from journals; DVC or DataLad integration could help
📍 Suggested location: New skills/phase-data/section or/data command extension

5. Multi-modal fusion (EEG+fMRI, EEG+eye tracking) [LOW]

Multi-modal recording is increasingly common; neuroflow currently handles modalities separately
📍 Suggested location: New /fusioncommand or extension to/data-analyze``

6. Real-time feedback loop for BCI [LOW]

Closed-loop BCI paradigms require tight latency; /tool-build could gain BCI-specific templates
📍 Suggested location: commands/tool-build.md, skills/phase-tool-build/SKILL.md

7. NotebookLM / AI note-taking integration [HIGH]

Open issue #166 — community request; could be a new agent or /notes enhancement
📍 Suggested location: agents/ or commands/notes.md

🔍 Detected capability gaps

The following research domains have sparse coverage in current commands/skills:

EEG / iEEG
fMRI
Eye tracking
ECG / Physiology
Literature / Search
Statistics / ML
Data management

⚠️ Threats / watchlist

PubMed E-utilities API rate limits

NCBI enforces 3 req/s without API key, 10/s with key; bulk /search runs may hit limits
Mitigation: Add retry with backoff in scholar agent; surface API-key prompt in /setup

bioRxiv MCP server availability

The paper-search-mcp-nodejs package is a community package; no SLA
Mitigation: Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

Claude Code plugin API changes

Anthropic may change plugin format, hook events, or skill invocation between versions
Mitigation: Pin plugin version in .claude-plugin/plugin.json; watch Anthropic changelog

Markdown linting strictness (mkdocs-material)

mkdocs build --strict fails on warnings; new docs may break CI if not checked locally
Mitigation: Add a pre-commit hook or local mkdocs build --strict alias in contributing docs

📋 Proposed backlog entries

These are proposals only — no PRs will be opened by this workflow.

[feature] LLM-assisted hypothesis generation → commands/ideation.md or new /hypothesis command
[feature] NotebookLM / AI note-taking integration → agents/ or commands/notes.md
[resilience] Add retry with backoff in scholar agent; surface API-key prompt in /setup
[resilience] Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

How this report is generated

This radar brief is generated deterministically from the repo's own content:
commands, skills, agents, and the README changelog. It does not make external web requests. Web-sourced intel can be added later by wiring an MCP search server (PubMed / bioRxiv are already configured in .claude-plugin/plugin.json).

0 replies

@stanislavjiricek · 2026-03-20T20:04:49Z

github-actions[bot]
Bot Mar 20, 2026

@stanislavjiricek ✅ ALL GOOD — 2026-03-20 (Radar Brief ready)

Research Radar Brief — Week 12, 2026

Generated 2026-03-20 | neuroflow v0.2.6 | 33 commands · 35 skills · 24 agents

Recent changes (context for gap analysis)

Most recent versions in changelog: 0.2.6, 0.2.5, 0.2.4, 0.2.3, 0.2.2

💡 New ideas (implementation candidates)

1. LLM-assisted hypothesis generation [HIGH]

LLMs can now generate and critique scientific hypotheses; could extend /ideation
📍 Suggested location: commands/ideation.md or new /hypothesis command

2. BIDS 2.0 support [MEDIUM]

BIDS 2.0 introduces new modalities and stricter validation rules
📍 Suggested location: skills/phase-data/SKILL.md — add BIDS 2.0 validation guidance

3. Automated preregistration syncing (OSF API) [MEDIUM]

OSF has a REST API; /preregistration could auto-submit instead of guiding manually
📍 Suggested location: commands/preregistration.md — add --submit flag

4. Reproducibility checks (code + data provenance) [MEDIUM]

Growing requirement from journals; DVC or DataLad integration could help
📍 Suggested location: New skills/phase-data/section or/data command extension

5. Multi-modal fusion (EEG+fMRI, EEG+eye tracking) [LOW]

Multi-modal recording is increasingly common; neuroflow currently handles modalities separately
📍 Suggested location: New /fusioncommand or extension to/data-analyze``

6. Real-time feedback loop for BCI [LOW]

Closed-loop BCI paradigms require tight latency; /tool-build could gain BCI-specific templates
📍 Suggested location: commands/tool-build.md, skills/phase-tool-build/SKILL.md

7. NotebookLM / AI note-taking integration [HIGH]

Open issue #166 — community request; could be a new agent or /notes enhancement
📍 Suggested location: agents/ or commands/notes.md

🔍 Detected capability gaps

The following research domains have sparse coverage in current commands/skills:

EEG / iEEG
fMRI
Eye tracking
ECG / Physiology
Literature / Search
Statistics / ML
Data management

⚠️ Threats / watchlist

PubMed E-utilities API rate limits

NCBI enforces 3 req/s without API key, 10/s with key; bulk /search runs may hit limits
Mitigation: Add retry with backoff in scholar agent; surface API-key prompt in /setup

bioRxiv MCP server availability

The paper-search-mcp-nodejs package is a community package; no SLA
Mitigation: Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

Claude Code plugin API changes

Anthropic may change plugin format, hook events, or skill invocation between versions
Mitigation: Pin plugin version in .claude-plugin/plugin.json; watch Anthropic changelog

Markdown linting strictness (mkdocs-material)

mkdocs build --strict fails on warnings; new docs may break CI if not checked locally
Mitigation: Add a pre-commit hook or local mkdocs build --strict alias in contributing docs

📋 Proposed backlog entries

These are proposals only — no PRs will be opened by this workflow.

[feature] LLM-assisted hypothesis generation → commands/ideation.md or new /hypothesis command
[feature] NotebookLM / AI note-taking integration → agents/ or commands/notes.md
[resilience] Add retry with backoff in scholar agent; surface API-key prompt in /setup
[resilience] Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

How this report is generated

This radar brief is generated deterministically from the repo's own content:
commands, skills, agents, and the README changelog. It does not make external web requests. Web-sourced intel can be added later by wiring an MCP search server (PubMed / bioRxiv are already configured in .claude-plugin/plugin.json).

0 replies

@stanislavjiricek · 2026-03-27T20:06:56Z

github-actions[bot]
Bot Mar 27, 2026

@stanislavjiricek ✅ ALL GOOD — 2026-03-27 (Radar Brief ready)

Research Radar Brief — Week 13, 2026

Generated 2026-03-27 | neuroflow v0.2.7 | 33 commands · 35 skills · 24 agents

Recent changes (context for gap analysis)

Most recent versions in changelog: 0.2.7, 0.2.6, 0.2.5, 0.2.4, 0.2.3

💡 New ideas (implementation candidates)

1. LLM-assisted hypothesis generation [HIGH]

LLMs can now generate and critique scientific hypotheses; could extend /ideation
📍 Suggested location: commands/ideation.md or new /hypothesis command

2. BIDS 2.0 support [MEDIUM]

BIDS 2.0 introduces new modalities and stricter validation rules
📍 Suggested location: skills/phase-data/SKILL.md — add BIDS 2.0 validation guidance

3. Automated preregistration syncing (OSF API) [MEDIUM]

OSF has a REST API; /preregistration could auto-submit instead of guiding manually
📍 Suggested location: commands/preregistration.md — add --submit flag

4. Reproducibility checks (code + data provenance) [MEDIUM]

Growing requirement from journals; DVC or DataLad integration could help
📍 Suggested location: New skills/phase-data/section or/data command extension

5. Multi-modal fusion (EEG+fMRI, EEG+eye tracking) [LOW]

Multi-modal recording is increasingly common; neuroflow currently handles modalities separately
📍 Suggested location: New /fusioncommand or extension to/data-analyze``

6. Real-time feedback loop for BCI [LOW]

Closed-loop BCI paradigms require tight latency; /tool-build could gain BCI-specific templates
📍 Suggested location: commands/tool-build.md, skills/phase-tool-build/SKILL.md

7. NotebookLM / AI note-taking integration [HIGH]

Open issue #166 — community request; could be a new agent or /notes enhancement
📍 Suggested location: agents/ or commands/notes.md

🔍 Detected capability gaps

The following research domains have sparse coverage in current commands/skills:

EEG / iEEG
fMRI
Eye tracking
ECG / Physiology
Literature / Search
Statistics / ML
Data management

⚠️ Threats / watchlist

PubMed E-utilities API rate limits

NCBI enforces 3 req/s without API key, 10/s with key; bulk /search runs may hit limits
Mitigation: Add retry with backoff in scholar agent; surface API-key prompt in /setup

bioRxiv MCP server availability

The paper-search-mcp-nodejs package is a community package; no SLA
Mitigation: Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

Claude Code plugin API changes

Anthropic may change plugin format, hook events, or skill invocation between versions
Mitigation: Pin plugin version in .claude-plugin/plugin.json; watch Anthropic changelog

Markdown linting strictness (mkdocs-material)

mkdocs build --strict fails on warnings; new docs may break CI if not checked locally
Mitigation: Add a pre-commit hook or local mkdocs build --strict alias in contributing docs

📋 Proposed backlog entries

These are proposals only — no PRs will be opened by this workflow.

[feature] LLM-assisted hypothesis generation → commands/ideation.md or new /hypothesis command
[feature] NotebookLM / AI note-taking integration → agents/ or commands/notes.md
[resilience] Add retry with backoff in scholar agent; surface API-key prompt in /setup
[resilience] Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

How this report is generated

This radar brief is generated deterministically from the repo's own content:
commands, skills, agents, and the README changelog. It does not make external web requests. Web-sourced intel can be added later by wiring an MCP search server (PubMed / bioRxiv are already configured in .claude-plugin/plugin.json).

0 replies

@stanislavjiricek · 2026-04-03T20:06:15Z

github-actions[bot]
Bot Apr 3, 2026

@stanislavjiricek ✅ ALL GOOD — 2026-04-03 (Radar Brief ready)

Research Radar Brief — Week 14, 2026

Generated 2026-04-03 | neuroflow v0.2.13 | 34 commands · 37 skills · 9 agents

Recent changes (context for gap analysis)

Most recent versions in changelog: 0.2.13, 0.2.12, 0.2.11, 0.2.10, 0.2.8

💡 New ideas (implementation candidates)

1. LLM-assisted hypothesis generation [HIGH]

LLMs can now generate and critique scientific hypotheses; could extend /ideation
📍 Suggested location: commands/ideation.md or new /hypothesis command

2. BIDS 2.0 support [MEDIUM]

BIDS 2.0 introduces new modalities and stricter validation rules
📍 Suggested location: skills/phase-data/SKILL.md — add BIDS 2.0 validation guidance

3. Automated preregistration syncing (OSF API) [MEDIUM]

OSF has a REST API; /preregistration could auto-submit instead of guiding manually
📍 Suggested location: commands/preregistration.md — add --submit flag

4. Reproducibility checks (code + data provenance) [MEDIUM]

Growing requirement from journals; DVC or DataLad integration could help
📍 Suggested location: New skills/phase-data/section or/data command extension

5. Multi-modal fusion (EEG+fMRI, EEG+eye tracking) [LOW]

Multi-modal recording is increasingly common; neuroflow currently handles modalities separately
📍 Suggested location: New /fusioncommand or extension to/data-analyze``

6. Real-time feedback loop for BCI [LOW]

Closed-loop BCI paradigms require tight latency; /tool-build could gain BCI-specific templates
📍 Suggested location: commands/tool-build.md, skills/phase-tool-build/SKILL.md

7. NotebookLM / AI note-taking integration [HIGH]

Open issue #166 — community request; could be a new agent or /notes enhancement
📍 Suggested location: agents/ or commands/notes.md

🔍 Detected capability gaps

The following research domains have sparse coverage in current commands/skills:

EEG / iEEG
fMRI
Eye tracking
ECG / Physiology
Literature / Search
Statistics / ML
Data management

⚠️ Threats / watchlist

PubMed E-utilities API rate limits

NCBI enforces 3 req/s without API key, 10/s with key; bulk /search runs may hit limits
Mitigation: Add retry with backoff in scholar agent; surface API-key prompt in /setup

bioRxiv MCP server availability

The paper-search-mcp-nodejs package is a community package; no SLA
Mitigation: Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

Claude Code plugin API changes

Anthropic may change plugin format, hook events, or skill invocation between versions
Mitigation: Pin plugin version in .claude-plugin/plugin.json; watch Anthropic changelog

Markdown linting strictness (mkdocs-material)

mkdocs build --strict fails on warnings; new docs may break CI if not checked locally
Mitigation: Add a pre-commit hook or local mkdocs build --strict alias in contributing docs

📋 Proposed backlog entries

These are proposals only — no PRs will be opened by this workflow.

[feature] LLM-assisted hypothesis generation → commands/ideation.md or new /hypothesis command
[feature] NotebookLM / AI note-taking integration → agents/ or commands/notes.md
[resilience] Add retry with backoff in scholar agent; surface API-key prompt in /setup
[resilience] Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

How this report is generated

This radar brief is generated deterministically from the repo's own content:
commands, skills, agents, and the README changelog. It does not make external web requests. Web-sourced intel can be added later by wiring an MCP search server (PubMed / bioRxiv are already configured in .claude-plugin/plugin.json).

0 replies

@stanislavjiricek · 2026-04-10T20:08:42Z

github-actions[bot]
Bot Apr 10, 2026

@stanislavjiricek ✅ ALL GOOD — 2026-04-10 (Radar Brief ready)

Research Radar Brief — Week 15, 2026

Generated 2026-04-10 | neuroflow v0.2.14 | 34 commands · 38 skills · 9 agents

Recent changes (context for gap analysis)

Most recent versions in changelog: 0.2.14, 0.2.13, 0.2.12, 0.2.11, 0.2.10

💡 New ideas (implementation candidates)

1. LLM-assisted hypothesis generation [HIGH]

LLMs can now generate and critique scientific hypotheses; could extend /ideation
📍 Suggested location: commands/ideation.md or new /hypothesis command

2. BIDS 2.0 support [MEDIUM]

BIDS 2.0 introduces new modalities and stricter validation rules
📍 Suggested location: skills/phase-data/SKILL.md — add BIDS 2.0 validation guidance

3. Automated preregistration syncing (OSF API) [MEDIUM]

OSF has a REST API; /preregistration could auto-submit instead of guiding manually
📍 Suggested location: commands/preregistration.md — add --submit flag

4. Reproducibility checks (code + data provenance) [MEDIUM]

Growing requirement from journals; DVC or DataLad integration could help
📍 Suggested location: New skills/phase-data/section or/data command extension

5. Multi-modal fusion (EEG+fMRI, EEG+eye tracking) [LOW]

Multi-modal recording is increasingly common; neuroflow currently handles modalities separately
📍 Suggested location: New /fusioncommand or extension to/data-analyze``

6. Real-time feedback loop for BCI [LOW]

Closed-loop BCI paradigms require tight latency; /tool-build could gain BCI-specific templates
📍 Suggested location: commands/tool-build.md, skills/phase-tool-build/SKILL.md

7. NotebookLM / AI note-taking integration [HIGH]

Open issue #166 — community request; could be a new agent or /notes enhancement
📍 Suggested location: agents/ or commands/notes.md

🔍 Detected capability gaps

The following research domains have sparse coverage in current commands/skills:

EEG / iEEG
fMRI
Eye tracking
ECG / Physiology
Literature / Search
Statistics / ML
Data management

⚠️ Threats / watchlist

PubMed E-utilities API rate limits

NCBI enforces 3 req/s without API key, 10/s with key; bulk /search runs may hit limits
Mitigation: Add retry with backoff in scholar agent; surface API-key prompt in /setup

bioRxiv MCP server availability

The paper-search-mcp-nodejs package is a community package; no SLA
Mitigation: Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

Claude Code plugin API changes

Anthropic may change plugin format, hook events, or skill invocation between versions
Mitigation: Pin plugin version in .claude-plugin/plugin.json; watch Anthropic changelog

Markdown linting strictness (mkdocs-material)

mkdocs build --strict fails on warnings; new docs may break CI if not checked locally
Mitigation: Add a pre-commit hook or local mkdocs build --strict alias in contributing docs

📋 Proposed backlog entries

These are proposals only — no PRs will be opened by this workflow.

[feature] LLM-assisted hypothesis generation → commands/ideation.md or new /hypothesis command
[feature] NotebookLM / AI note-taking integration → agents/ or commands/notes.md
[resilience] Add retry with backoff in scholar agent; surface API-key prompt in /setup
[resilience] Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

How this report is generated

This radar brief is generated deterministically from the repo's own content:
commands, skills, agents, and the README changelog. It does not make external web requests. Web-sourced intel can be added later by wiring an MCP search server (PubMed / bioRxiv are already configured in .claude-plugin/plugin.json).

0 replies

@stanislavjiricek · 2026-04-17T20:11:50Z

github-actions[bot]
Bot Apr 17, 2026

@stanislavjiricek ✅ ALL GOOD — 2026-04-17 (Radar Brief ready)

Research Radar Brief — Week 16, 2026

Generated 2026-04-17 | neuroflow v0.2.15 | 36 commands · 39 skills · 9 agents

Recent changes (context for gap analysis)

Most recent versions in changelog: 0.2.15, 0.2.14, 0.2.13, 0.2.12, 0.2.11

💡 New ideas (implementation candidates)

1. LLM-assisted hypothesis generation [HIGH]

LLMs can now generate and critique scientific hypotheses; could extend /ideation
📍 Suggested location: commands/ideation.md or new /hypothesis command

2. BIDS 2.0 support [MEDIUM]

BIDS 2.0 introduces new modalities and stricter validation rules
📍 Suggested location: skills/phase-data/SKILL.md — add BIDS 2.0 validation guidance

3. Automated preregistration syncing (OSF API) [MEDIUM]

OSF has a REST API; /preregistration could auto-submit instead of guiding manually
📍 Suggested location: commands/preregistration.md — add --submit flag

4. Reproducibility checks (code + data provenance) [MEDIUM]

Growing requirement from journals; DVC or DataLad integration could help
📍 Suggested location: New skills/phase-data/section or/data command extension

5. Multi-modal fusion (EEG+fMRI, EEG+eye tracking) [LOW]

Multi-modal recording is increasingly common; neuroflow currently handles modalities separately
📍 Suggested location: New /fusioncommand or extension to/data-analyze``

6. Real-time feedback loop for BCI [LOW]

Closed-loop BCI paradigms require tight latency; /tool-build could gain BCI-specific templates
📍 Suggested location: commands/tool-build.md, skills/phase-tool-build/SKILL.md

7. NotebookLM / AI note-taking integration [HIGH]

Open issue #166 — community request; could be a new agent or /notes enhancement
📍 Suggested location: agents/ or commands/notes.md

🔍 Detected capability gaps

The following research domains have sparse coverage in current commands/skills:

EEG / iEEG
fMRI
Eye tracking
ECG / Physiology
Literature / Search
Statistics / ML
Data management

⚠️ Threats / watchlist

PubMed E-utilities API rate limits

NCBI enforces 3 req/s without API key, 10/s with key; bulk /search runs may hit limits
Mitigation: Add retry with backoff in scholar agent; surface API-key prompt in /setup

bioRxiv MCP server availability

The paper-search-mcp-nodejs package is a community package; no SLA
Mitigation: Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

Claude Code plugin API changes

Anthropic may change plugin format, hook events, or skill invocation between versions
Mitigation: Pin plugin version in .claude-plugin/plugin.json; watch Anthropic changelog

Markdown linting strictness (mkdocs-material)

mkdocs build --strict fails on warnings; new docs may break CI if not checked locally
Mitigation: Add a pre-commit hook or local mkdocs build --strict alias in contributing docs

📋 Proposed backlog entries

These are proposals only — no PRs will be opened by this workflow.

[feature] LLM-assisted hypothesis generation → commands/ideation.md or new /hypothesis command
[feature] NotebookLM / AI note-taking integration → agents/ or commands/notes.md
[resilience] Add retry with backoff in scholar agent; surface API-key prompt in /setup
[resilience] Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

How this report is generated

This radar brief is generated deterministically from the repo's own content:
commands, skills, agents, and the README changelog. It does not make external web requests. Web-sourced intel can be added later by wiring an MCP search server (PubMed / bioRxiv are already configured in .claude-plugin/plugin.json).

0 replies

@stanislavjiricek · 2026-04-24T20:12:13Z

github-actions[bot]
Bot Apr 24, 2026

@stanislavjiricek ✅ ALL GOOD — 2026-04-24 (Radar Brief ready)

Research Radar Brief — Week 17, 2026

Generated 2026-04-24 | neuroflow v0.2.16 | 36 commands · 39 skills · 9 agents

Recent changes (context for gap analysis)

Most recent versions in changelog: 0.2.16, 0.2.15, 0.2.14, 0.2.13, 0.2.12

💡 New ideas (implementation candidates)

1. LLM-assisted hypothesis generation [HIGH]

LLMs can now generate and critique scientific hypotheses; could extend /ideation
📍 Suggested location: commands/ideation.md or new /hypothesis command

2. BIDS 2.0 support [MEDIUM]

BIDS 2.0 introduces new modalities and stricter validation rules
📍 Suggested location: skills/phase-data/SKILL.md — add BIDS 2.0 validation guidance

3. Automated preregistration syncing (OSF API) [MEDIUM]

OSF has a REST API; /preregistration could auto-submit instead of guiding manually
📍 Suggested location: commands/preregistration.md — add --submit flag

4. Reproducibility checks (code + data provenance) [MEDIUM]

Growing requirement from journals; DVC or DataLad integration could help
📍 Suggested location: New skills/phase-data/section or/data command extension

5. Multi-modal fusion (EEG+fMRI, EEG+eye tracking) [LOW]

Multi-modal recording is increasingly common; neuroflow currently handles modalities separately
📍 Suggested location: New /fusioncommand or extension to/data-analyze``

6. Real-time feedback loop for BCI [LOW]

Closed-loop BCI paradigms require tight latency; /tool-build could gain BCI-specific templates
📍 Suggested location: commands/tool-build.md, skills/phase-tool-build/SKILL.md

7. NotebookLM / AI note-taking integration [HIGH]

Open issue #166 — community request; could be a new agent or /notes enhancement
📍 Suggested location: agents/ or commands/notes.md

🔍 Detected capability gaps

The following research domains have sparse coverage in current commands/skills:

EEG / iEEG
fMRI
Eye tracking
ECG / Physiology
Literature / Search
Statistics / ML
Data management

⚠️ Threats / watchlist

PubMed E-utilities API rate limits

NCBI enforces 3 req/s without API key, 10/s with key; bulk /search runs may hit limits
Mitigation: Add retry with backoff in scholar agent; surface API-key prompt in /setup

bioRxiv MCP server availability

The paper-search-mcp-nodejs package is a community package; no SLA
Mitigation: Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

Claude Code plugin API changes

Anthropic may change plugin format, hook events, or skill invocation between versions
Mitigation: Pin plugin version in .claude-plugin/plugin.json; watch Anthropic changelog

Markdown linting strictness (mkdocs-material)

mkdocs build --strict fails on warnings; new docs may break CI if not checked locally
Mitigation: Add a pre-commit hook or local mkdocs build --strict alias in contributing docs

📋 Proposed backlog entries

These are proposals only — no PRs will be opened by this workflow.

[feature] LLM-assisted hypothesis generation → commands/ideation.md or new /hypothesis command
[feature] NotebookLM / AI note-taking integration → agents/ or commands/notes.md
[resilience] Add retry with backoff in scholar agent; surface API-key prompt in /setup
[resilience] Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

How this report is generated

This radar brief is generated deterministically from the repo's own content:
commands, skills, agents, and the README changelog. It does not make external web requests. Web-sourced intel can be added later by wiring an MCP search server (PubMed / bioRxiv are already configured in .claude-plugin/plugin.json).

0 replies

@stanislavjiricek · 2026-05-01T20:15:45Z

github-actions[bot]
Bot May 1, 2026

@stanislavjiricek ✅ ALL GOOD — 2026-05-01 (Radar Brief ready)

Research Radar Brief — Week 18, 2026

Generated 2026-05-01 | neuroflow v0.2.16 | 36 commands · 39 skills · 9 agents

Recent changes (context for gap analysis)

Most recent versions in changelog: 0.2.16, 0.2.15, 0.2.14, 0.2.13, 0.2.12

💡 New ideas (implementation candidates)

1. LLM-assisted hypothesis generation [HIGH]

LLMs can now generate and critique scientific hypotheses; could extend /ideation
📍 Suggested location: commands/ideation.md or new /hypothesis command

2. BIDS 2.0 support [MEDIUM]

BIDS 2.0 introduces new modalities and stricter validation rules
📍 Suggested location: skills/phase-data/SKILL.md — add BIDS 2.0 validation guidance

3. Automated preregistration syncing (OSF API) [MEDIUM]

OSF has a REST API; /preregistration could auto-submit instead of guiding manually
📍 Suggested location: commands/preregistration.md — add --submit flag

4. Reproducibility checks (code + data provenance) [MEDIUM]

Growing requirement from journals; DVC or DataLad integration could help
📍 Suggested location: New skills/phase-data/section or/data command extension

5. Multi-modal fusion (EEG+fMRI, EEG+eye tracking) [LOW]

Multi-modal recording is increasingly common; neuroflow currently handles modalities separately
📍 Suggested location: New /fusioncommand or extension to/data-analyze``

6. Real-time feedback loop for BCI [LOW]

Closed-loop BCI paradigms require tight latency; /tool-build could gain BCI-specific templates
📍 Suggested location: commands/tool-build.md, skills/phase-tool-build/SKILL.md

7. NotebookLM / AI note-taking integration [HIGH]

Open issue #166 — community request; could be a new agent or /notes enhancement
📍 Suggested location: agents/ or commands/notes.md

🔍 Detected capability gaps

The following research domains have sparse coverage in current commands/skills:

EEG / iEEG
fMRI
Eye tracking
ECG / Physiology
Literature / Search
Statistics / ML
Data management

⚠️ Threats / watchlist

PubMed E-utilities API rate limits

NCBI enforces 3 req/s without API key, 10/s with key; bulk /search runs may hit limits
Mitigation: Add retry with backoff in scholar agent; surface API-key prompt in /setup

bioRxiv MCP server availability

The paper-search-mcp-nodejs package is a community package; no SLA
Mitigation: Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

Claude Code plugin API changes

Anthropic may change plugin format, hook events, or skill invocation between versions
Mitigation: Pin plugin version in .claude-plugin/plugin.json; watch Anthropic changelog

Markdown linting strictness (mkdocs-material)

mkdocs build --strict fails on warnings; new docs may break CI if not checked locally
Mitigation: Add a pre-commit hook or local mkdocs build --strict alias in contributing docs

📋 Proposed backlog entries

These are proposals only — no PRs will be opened by this workflow.

[feature] LLM-assisted hypothesis generation → commands/ideation.md or new /hypothesis command
[feature] NotebookLM / AI note-taking integration → agents/ or commands/notes.md
[resilience] Add retry with backoff in scholar agent; surface API-key prompt in /setup
[resilience] Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

How this report is generated

This radar brief is generated deterministically from the repo's own content:
commands, skills, agents, and the README changelog. It does not make external web requests. Web-sourced intel can be added later by wiring an MCP search server (PubMed / bioRxiv are already configured in .claude-plugin/plugin.json).

0 replies

@stanislavjiricek · 2026-05-08T20:18:55Z

github-actions[bot]
Bot May 8, 2026

@stanislavjiricek ✅ ALL GOOD — 2026-05-08 (Radar Brief ready)

Research Radar Brief — Week 19, 2026

Generated 2026-05-08 | neuroflow v0.2.18 | 36 commands · 39 skills · 9 agents

Recent changes (context for gap analysis)

Most recent versions in changelog: 0.2.18, 0.2.16, 0.2.15, 0.2.14, 0.2.13

💡 New ideas (implementation candidates)

1. LLM-assisted hypothesis generation [HIGH]

LLMs can now generate and critique scientific hypotheses; could extend /ideation
📍 Suggested location: commands/ideation.md or new /hypothesis command

2. BIDS 2.0 support [MEDIUM]

BIDS 2.0 introduces new modalities and stricter validation rules
📍 Suggested location: skills/phase-data/SKILL.md — add BIDS 2.0 validation guidance

3. Automated preregistration syncing (OSF API) [MEDIUM]

OSF has a REST API; /preregistration could auto-submit instead of guiding manually
📍 Suggested location: commands/preregistration.md — add --submit flag

4. Reproducibility checks (code + data provenance) [MEDIUM]

Growing requirement from journals; DVC or DataLad integration could help
📍 Suggested location: New skills/phase-data/section or/data command extension

5. Multi-modal fusion (EEG+fMRI, EEG+eye tracking) [LOW]

Multi-modal recording is increasingly common; neuroflow currently handles modalities separately
📍 Suggested location: New /fusioncommand or extension to/data-analyze``

6. Real-time feedback loop for BCI [LOW]

Closed-loop BCI paradigms require tight latency; /tool-build could gain BCI-specific templates
📍 Suggested location: commands/tool-build.md, skills/phase-tool-build/SKILL.md

7. NotebookLM / AI note-taking integration [HIGH]

Open issue #166 — community request; could be a new agent or /notes enhancement
📍 Suggested location: agents/ or commands/notes.md

🔍 Detected capability gaps

The following research domains have sparse coverage in current commands/skills:

EEG / iEEG
fMRI
Eye tracking
ECG / Physiology
Literature / Search
Statistics / ML
Data management

⚠️ Threats / watchlist

PubMed E-utilities API rate limits

NCBI enforces 3 req/s without API key, 10/s with key; bulk /search runs may hit limits
Mitigation: Add retry with backoff in scholar agent; surface API-key prompt in /setup

bioRxiv MCP server availability

The paper-search-mcp-nodejs package is a community package; no SLA
Mitigation: Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

Claude Code plugin API changes

Anthropic may change plugin format, hook events, or skill invocation between versions
Mitigation: Pin plugin version in .claude-plugin/plugin.json; watch Anthropic changelog

Markdown linting strictness (mkdocs-material)

mkdocs build --strict fails on warnings; new docs may break CI if not checked locally
Mitigation: Add a pre-commit hook or local mkdocs build --strict alias in contributing docs

📋 Proposed backlog entries

These are proposals only — no PRs will be opened by this workflow.

[feature] LLM-assisted hypothesis generation → commands/ideation.md or new /hypothesis command
[feature] NotebookLM / AI note-taking integration → agents/ or commands/notes.md
[resilience] Add retry with backoff in scholar agent; surface API-key prompt in /setup
[resilience] Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

How this report is generated

This radar brief is generated deterministically from the repo's own content:
commands, skills, agents, and the README changelog. It does not make external web requests. Web-sourced intel can be added later by wiring an MCP search server (PubMed / bioRxiv are already configured in .claude-plugin/plugin.json).

0 replies

@stanislavjiricek · 2026-05-15T20:24:09Z

github-actions[bot]
Bot May 15, 2026

@stanislavjiricek ✅ ALL GOOD — 2026-05-15 (Radar Brief ready)

Research Radar Brief — Week 20, 2026

Generated 2026-05-15 | neuroflow v0.2.18 | 36 commands · 39 skills · 9 agents

Recent changes (context for gap analysis)

Most recent versions in changelog: 0.2.18, 0.2.16, 0.2.15, 0.2.14, 0.2.13

💡 New ideas (implementation candidates)

1. LLM-assisted hypothesis generation [HIGH]

LLMs can now generate and critique scientific hypotheses; could extend /ideation
📍 Suggested location: commands/ideation.md or new /hypothesis command

2. BIDS 2.0 support [MEDIUM]

BIDS 2.0 introduces new modalities and stricter validation rules
📍 Suggested location: skills/phase-data/SKILL.md — add BIDS 2.0 validation guidance

3. Automated preregistration syncing (OSF API) [MEDIUM]

OSF has a REST API; /preregistration could auto-submit instead of guiding manually
📍 Suggested location: commands/preregistration.md — add --submit flag

4. Reproducibility checks (code + data provenance) [MEDIUM]

Growing requirement from journals; DVC or DataLad integration could help
📍 Suggested location: New skills/phase-data/section or/data command extension

5. Multi-modal fusion (EEG+fMRI, EEG+eye tracking) [LOW]

Multi-modal recording is increasingly common; neuroflow currently handles modalities separately
📍 Suggested location: New /fusioncommand or extension to/data-analyze``

6. Real-time feedback loop for BCI [LOW]

Closed-loop BCI paradigms require tight latency; /tool-build could gain BCI-specific templates
📍 Suggested location: commands/tool-build.md, skills/phase-tool-build/SKILL.md

7. NotebookLM / AI note-taking integration [HIGH]

Open issue #166 — community request; could be a new agent or /notes enhancement
📍 Suggested location: agents/ or commands/notes.md

🔍 Detected capability gaps

The following research domains have sparse coverage in current commands/skills:

EEG / iEEG
fMRI
Eye tracking
ECG / Physiology
Literature / Search
Statistics / ML
Data management

⚠️ Threats / watchlist

PubMed E-utilities API rate limits

NCBI enforces 3 req/s without API key, 10/s with key; bulk /search runs may hit limits
Mitigation: Add retry with backoff in scholar agent; surface API-key prompt in /setup

bioRxiv MCP server availability

The paper-search-mcp-nodejs package is a community package; no SLA
Mitigation: Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

Claude Code plugin API changes

Anthropic may change plugin format, hook events, or skill invocation between versions
Mitigation: Pin plugin version in .claude-plugin/plugin.json; watch Anthropic changelog

Markdown linting strictness (mkdocs-material)

mkdocs build --strict fails on warnings; new docs may break CI if not checked locally
Mitigation: Add a pre-commit hook or local mkdocs build --strict alias in contributing docs

📋 Proposed backlog entries

These are proposals only — no PRs will be opened by this workflow.

[feature] LLM-assisted hypothesis generation → commands/ideation.md or new /hypothesis command
[feature] NotebookLM / AI note-taking integration → agents/ or commands/notes.md
[resilience] Add retry with backoff in scholar agent; surface API-key prompt in /setup
[resilience] Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

How this report is generated

This radar brief is generated deterministically from the repo's own content:
commands, skills, agents, and the README changelog. It does not make external web requests. Web-sourced intel can be added later by wiring an MCP search server (PubMed / bioRxiv are already configured in .claude-plugin/plugin.json).

0 replies

@stanislavjiricek · 2026-05-22T20:30:44Z

github-actions[bot]
Bot May 22, 2026

@stanislavjiricek ✅ ALL GOOD — 2026-05-22 (Radar Brief ready)

Research Radar Brief — Week 21, 2026

Generated 2026-05-22 | neuroflow v0.2.18 | 36 commands · 39 skills · 9 agents

Recent changes (context for gap analysis)

Most recent versions in changelog: 0.2.18, 0.2.16, 0.2.15, 0.2.14, 0.2.13

💡 New ideas (implementation candidates)

1. LLM-assisted hypothesis generation [HIGH]

LLMs can now generate and critique scientific hypotheses; could extend /ideation
📍 Suggested location: commands/ideation.md or new /hypothesis command

2. BIDS 2.0 support [MEDIUM]

BIDS 2.0 introduces new modalities and stricter validation rules
📍 Suggested location: skills/phase-data/SKILL.md — add BIDS 2.0 validation guidance

3. Automated preregistration syncing (OSF API) [MEDIUM]

OSF has a REST API; /preregistration could auto-submit instead of guiding manually
📍 Suggested location: commands/preregistration.md — add --submit flag

4. Reproducibility checks (code + data provenance) [MEDIUM]

Growing requirement from journals; DVC or DataLad integration could help
📍 Suggested location: New skills/phase-data/section or/data command extension

5. Multi-modal fusion (EEG+fMRI, EEG+eye tracking) [LOW]

Multi-modal recording is increasingly common; neuroflow currently handles modalities separately
📍 Suggested location: New /fusioncommand or extension to/data-analyze``

6. Real-time feedback loop for BCI [LOW]

Closed-loop BCI paradigms require tight latency; /tool-build could gain BCI-specific templates
📍 Suggested location: commands/tool-build.md, skills/phase-tool-build/SKILL.md

7. NotebookLM / AI note-taking integration [HIGH]

Open issue #166 — community request; could be a new agent or /notes enhancement
📍 Suggested location: agents/ or commands/notes.md

🔍 Detected capability gaps

The following research domains have sparse coverage in current commands/skills:

EEG / iEEG
fMRI
Eye tracking
ECG / Physiology
Literature / Search
Statistics / ML
Data management

⚠️ Threats / watchlist

PubMed E-utilities API rate limits

NCBI enforces 3 req/s without API key, 10/s with key; bulk /search runs may hit limits
Mitigation: Add retry with backoff in scholar agent; surface API-key prompt in /setup

bioRxiv MCP server availability

The paper-search-mcp-nodejs package is a community package; no SLA
Mitigation: Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

Claude Code plugin API changes

Anthropic may change plugin format, hook events, or skill invocation between versions
Mitigation: Pin plugin version in .claude-plugin/plugin.json; watch Anthropic changelog

Markdown linting strictness (mkdocs-material)

mkdocs build --strict fails on warnings; new docs may break CI if not checked locally
Mitigation: Add a pre-commit hook or local mkdocs build --strict alias in contributing docs

📋 Proposed backlog entries

These are proposals only — no PRs will be opened by this workflow.

[feature] LLM-assisted hypothesis generation → commands/ideation.md or new /hypothesis command
[feature] NotebookLM / AI note-taking integration → agents/ or commands/notes.md
[resilience] Add retry with backoff in scholar agent; surface API-key prompt in /setup
[resilience] Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

How this report is generated

This radar brief is generated deterministically from the repo's own content:
commands, skills, agents, and the README changelog. It does not make external web requests. Web-sourced intel can be added later by wiring an MCP search server (PubMed / bioRxiv are already configured in .claude-plugin/plugin.json).

0 replies

@stanislavjiricek · 2026-05-29T20:44:15Z

github-actions[bot]
Bot May 29, 2026

@stanislavjiricek ✅ ALL GOOD — 2026-05-29 (Radar Brief ready)

Research Radar Brief — Week 22, 2026

Generated 2026-05-29 | neuroflow v0.2.19 | 36 commands · 40 skills · 9 agents

Recent changes (context for gap analysis)

Most recent versions in changelog: 0.2.19, 0.2.18, 0.2.16, 0.2.15, 0.2.14

💡 New ideas (implementation candidates)

1. LLM-assisted hypothesis generation [HIGH]

LLMs can now generate and critique scientific hypotheses; could extend /ideation
📍 Suggested location: commands/ideation.md or new /hypothesis command

2. BIDS 2.0 support [MEDIUM]

BIDS 2.0 introduces new modalities and stricter validation rules
📍 Suggested location: skills/phase-data/SKILL.md — add BIDS 2.0 validation guidance

3. Automated preregistration syncing (OSF API) [MEDIUM]

OSF has a REST API; /preregistration could auto-submit instead of guiding manually
📍 Suggested location: commands/preregistration.md — add --submit flag

4. Reproducibility checks (code + data provenance) [MEDIUM]

Growing requirement from journals; DVC or DataLad integration could help
📍 Suggested location: New skills/phase-data/section or/data command extension

5. Multi-modal fusion (EEG+fMRI, EEG+eye tracking) [LOW]

Multi-modal recording is increasingly common; neuroflow currently handles modalities separately
📍 Suggested location: New /fusioncommand or extension to/data-analyze``

6. Real-time feedback loop for BCI [LOW]

Closed-loop BCI paradigms require tight latency; /tool-build could gain BCI-specific templates
📍 Suggested location: commands/tool-build.md, skills/phase-tool-build/SKILL.md

7. NotebookLM / AI note-taking integration [HIGH]

Open issue #166 — community request; could be a new agent or /notes enhancement
📍 Suggested location: agents/ or commands/notes.md

🔍 Detected capability gaps

The following research domains have sparse coverage in current commands/skills:

EEG / iEEG
fMRI
Eye tracking
ECG / Physiology
Literature / Search
Statistics / ML

⚠️ Threats / watchlist

PubMed E-utilities API rate limits

NCBI enforces 3 req/s without API key, 10/s with key; bulk /search runs may hit limits
Mitigation: Add retry with backoff in scholar agent; surface API-key prompt in /setup

bioRxiv MCP server availability

The paper-search-mcp-nodejs package is a community package; no SLA
Mitigation: Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

Claude Code plugin API changes

Anthropic may change plugin format, hook events, or skill invocation between versions
Mitigation: Pin plugin version in .claude-plugin/plugin.json; watch Anthropic changelog

Markdown linting strictness (mkdocs-material)

mkdocs build --strict fails on warnings; new docs may break CI if not checked locally
Mitigation: Add a pre-commit hook or local mkdocs build --strict alias in contributing docs

📋 Proposed backlog entries

These are proposals only — no PRs will be opened by this workflow.

[feature] LLM-assisted hypothesis generation → commands/ideation.md or new /hypothesis command
[feature] NotebookLM / AI note-taking integration → agents/ or commands/notes.md
[resilience] Add retry with backoff in scholar agent; surface API-key prompt in /setup
[resilience] Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

How this report is generated

This radar brief is generated deterministically from the repo's own content:
commands, skills, agents, and the README changelog. It does not make external web requests. Web-sourced intel can be added later by wiring an MCP search server (PubMed / bioRxiv are already configured in .claude-plugin/plugin.json).

0 replies

@stanislavjiricek · 2026-06-05T20:34:12Z

github-actions[bot]
Bot Jun 5, 2026

@stanislavjiricek ✅ ALL GOOD — 2026-06-05 (Radar Brief ready)

Research Radar Brief — Week 23, 2026

Generated 2026-06-05 | neuroflow v0.2.20 | 36 commands · 40 skills · 9 agents

Recent changes (context for gap analysis)

Most recent versions in changelog: 0.2.20, 0.2.19, 0.2.18, 0.2.16, 0.2.15

💡 New ideas (implementation candidates)

1. LLM-assisted hypothesis generation [HIGH]

LLMs can now generate and critique scientific hypotheses; could extend /ideation
📍 Suggested location: commands/ideation.md or new /hypothesis command

2. BIDS 2.0 support [MEDIUM]

BIDS 2.0 introduces new modalities and stricter validation rules
📍 Suggested location: skills/phase-data/SKILL.md — add BIDS 2.0 validation guidance

3. Automated preregistration syncing (OSF API) [MEDIUM]

OSF has a REST API; /preregistration could auto-submit instead of guiding manually
📍 Suggested location: commands/preregistration.md — add --submit flag

4. Reproducibility checks (code + data provenance) [MEDIUM]

Growing requirement from journals; DVC or DataLad integration could help
📍 Suggested location: New skills/phase-data/section or/data command extension

5. Multi-modal fusion (EEG+fMRI, EEG+eye tracking) [LOW]

Multi-modal recording is increasingly common; neuroflow currently handles modalities separately
📍 Suggested location: New /fusioncommand or extension to/data-analyze``

6. Real-time feedback loop for BCI [LOW]

Closed-loop BCI paradigms require tight latency; /tool-build could gain BCI-specific templates
📍 Suggested location: commands/tool-build.md, skills/phase-tool-build/SKILL.md

7. NotebookLM / AI note-taking integration [HIGH]

Open issue #166 — community request; could be a new agent or /notes enhancement
📍 Suggested location: agents/ or commands/notes.md

🔍 Detected capability gaps

The following research domains have sparse coverage in current commands/skills:

EEG / iEEG
fMRI
Eye tracking
ECG / Physiology
Literature / Search
Statistics / ML

⚠️ Threats / watchlist

PubMed E-utilities API rate limits

NCBI enforces 3 req/s without API key, 10/s with key; bulk /search runs may hit limits
Mitigation: Add retry with backoff in scholar agent; surface API-key prompt in /setup

bioRxiv MCP server availability

The paper-search-mcp-nodejs package is a community package; no SLA
Mitigation: Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

Claude Code plugin API changes

Anthropic may change plugin format, hook events, or skill invocation between versions
Mitigation: Pin plugin version in .claude-plugin/plugin.json; watch Anthropic changelog

Markdown linting strictness (mkdocs-material)

mkdocs build --strict fails on warnings; new docs may break CI if not checked locally
Mitigation: Add a pre-commit hook or local mkdocs build --strict alias in contributing docs

📋 Proposed backlog entries

These are proposals only — no PRs will be opened by this workflow.

[feature] LLM-assisted hypothesis generation → commands/ideation.md or new /hypothesis command
[feature] NotebookLM / AI note-taking integration → agents/ or commands/notes.md
[resilience] Add retry with backoff in scholar agent; surface API-key prompt in /setup
[resilience] Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

How this report is generated

This radar brief is generated deterministically from the repo's own content:
commands, skills, agents, and the README changelog. It does not make external web requests. Web-sourced intel can be added later by wiring an MCP search server (PubMed / bioRxiv are already configured in .claude-plugin/plugin.json).

0 replies

@stanislavjiricek · 2026-06-12T20:41:09Z

github-actions[bot]
Bot Jun 12, 2026

@stanislavjiricek ✅ ALL GOOD — 2026-06-12 (Radar Brief ready)

Research Radar Brief — Week 24, 2026

Generated 2026-06-12 | neuroflow v0.2.20 | 36 commands · 40 skills · 9 agents

Recent changes (context for gap analysis)

Most recent versions in changelog: 0.2.20, 0.2.19, 0.2.18, 0.2.16, 0.2.15

💡 New ideas (implementation candidates)

1. LLM-assisted hypothesis generation [HIGH]

LLMs can now generate and critique scientific hypotheses; could extend /ideation
📍 Suggested location: commands/ideation.md or new /hypothesis command

2. BIDS 2.0 support [MEDIUM]

BIDS 2.0 introduces new modalities and stricter validation rules
📍 Suggested location: skills/phase-data/SKILL.md — add BIDS 2.0 validation guidance

3. Automated preregistration syncing (OSF API) [MEDIUM]

OSF has a REST API; /preregistration could auto-submit instead of guiding manually
📍 Suggested location: commands/preregistration.md — add --submit flag

4. Reproducibility checks (code + data provenance) [MEDIUM]

Growing requirement from journals; DVC or DataLad integration could help
📍 Suggested location: New skills/phase-data/section or/data command extension

5. Multi-modal fusion (EEG+fMRI, EEG+eye tracking) [LOW]

Multi-modal recording is increasingly common; neuroflow currently handles modalities separately
📍 Suggested location: New /fusioncommand or extension to/data-analyze``

6. Real-time feedback loop for BCI [LOW]

Closed-loop BCI paradigms require tight latency; /tool-build could gain BCI-specific templates
📍 Suggested location: commands/tool-build.md, skills/phase-tool-build/SKILL.md

7. NotebookLM / AI note-taking integration [HIGH]

Open issue #166 — community request; could be a new agent or /notes enhancement
📍 Suggested location: agents/ or commands/notes.md

🔍 Detected capability gaps

The following research domains have sparse coverage in current commands/skills:

EEG / iEEG
fMRI
Eye tracking
ECG / Physiology
Literature / Search
Statistics / ML

⚠️ Threats / watchlist

PubMed E-utilities API rate limits

NCBI enforces 3 req/s without API key, 10/s with key; bulk /search runs may hit limits
Mitigation: Add retry with backoff in scholar agent; surface API-key prompt in /setup

bioRxiv MCP server availability

The paper-search-mcp-nodejs package is a community package; no SLA
Mitigation: Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

Claude Code plugin API changes

Anthropic may change plugin format, hook events, or skill invocation between versions
Mitigation: Pin plugin version in .claude-plugin/plugin.json; watch Anthropic changelog

Markdown linting strictness (mkdocs-material)

mkdocs build --strict fails on warnings; new docs may break CI if not checked locally
Mitigation: Add a pre-commit hook or local mkdocs build --strict alias in contributing docs

📋 Proposed backlog entries

These are proposals only — no PRs will be opened by this workflow.

[feature] LLM-assisted hypothesis generation → commands/ideation.md or new /hypothesis command
[feature] NotebookLM / AI note-taking integration → agents/ or commands/notes.md
[resilience] Add retry with backoff in scholar agent; surface API-key prompt in /setup
[resilience] Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

How this report is generated

This radar brief is generated deterministically from the repo's own content:
commands, skills, agents, and the README changelog. It does not make external web requests. Web-sourced intel can be added later by wiring an MCP search server (PubMed / bioRxiv are already configured in .claude-plugin/plugin.json).

0 replies

@stanislavjiricek · 2026-06-19T20:28:32Z

github-actions[bot]
Bot Jun 19, 2026

@stanislavjiricek ✅ ALL GOOD — 2026-06-19 (Radar Brief ready)

Research Radar Brief — Week 25, 2026

Generated 2026-06-19 | neuroflow v0.2.20 | 36 commands · 40 skills · 9 agents

Recent changes (context for gap analysis)

Most recent versions in changelog: 0.2.20, 0.2.19, 0.2.18, 0.2.16, 0.2.15

💡 New ideas (implementation candidates)

1. LLM-assisted hypothesis generation [HIGH]

LLMs can now generate and critique scientific hypotheses; could extend /ideation
📍 Suggested location: commands/ideation.md or new /hypothesis command

2. BIDS 2.0 support [MEDIUM]

BIDS 2.0 introduces new modalities and stricter validation rules
📍 Suggested location: skills/phase-data/SKILL.md — add BIDS 2.0 validation guidance

3. Automated preregistration syncing (OSF API) [MEDIUM]

OSF has a REST API; /preregistration could auto-submit instead of guiding manually
📍 Suggested location: commands/preregistration.md — add --submit flag

4. Reproducibility checks (code + data provenance) [MEDIUM]

Growing requirement from journals; DVC or DataLad integration could help
📍 Suggested location: New skills/phase-data/section or/data command extension

5. Multi-modal fusion (EEG+fMRI, EEG+eye tracking) [LOW]

Multi-modal recording is increasingly common; neuroflow currently handles modalities separately
📍 Suggested location: New /fusioncommand or extension to/data-analyze``

6. Real-time feedback loop for BCI [LOW]

Closed-loop BCI paradigms require tight latency; /tool-build could gain BCI-specific templates
📍 Suggested location: commands/tool-build.md, skills/phase-tool-build/SKILL.md

7. NotebookLM / AI note-taking integration [HIGH]

Open issue #166 — community request; could be a new agent or /notes enhancement
📍 Suggested location: agents/ or commands/notes.md

🔍 Detected capability gaps

The following research domains have sparse coverage in current commands/skills:

EEG / iEEG
fMRI
Eye tracking
ECG / Physiology
Literature / Search
Statistics / ML

⚠️ Threats / watchlist

PubMed E-utilities API rate limits

NCBI enforces 3 req/s without API key, 10/s with key; bulk /search runs may hit limits
Mitigation: Add retry with backoff in scholar agent; surface API-key prompt in /setup

bioRxiv MCP server availability

The paper-search-mcp-nodejs package is a community package; no SLA
Mitigation: Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

Claude Code plugin API changes

Anthropic may change plugin format, hook events, or skill invocation between versions
Mitigation: Pin plugin version in .claude-plugin/plugin.json; watch Anthropic changelog

Markdown linting strictness (mkdocs-material)

mkdocs build --strict fails on warnings; new docs may break CI if not checked locally
Mitigation: Add a pre-commit hook or local mkdocs build --strict alias in contributing docs

📋 Proposed backlog entries

These are proposals only — no PRs will be opened by this workflow.

[feature] LLM-assisted hypothesis generation → commands/ideation.md or new /hypothesis command
[feature] NotebookLM / AI note-taking integration → agents/ or commands/notes.md
[resilience] Add retry with backoff in scholar agent; surface API-key prompt in /setup
[resilience] Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

How this report is generated

This radar brief is generated deterministically from the repo's own content:
commands, skills, agents, and the README changelog. It does not make external web requests. Web-sourced intel can be added later by wiring an MCP search server (PubMed / bioRxiv are already configured in .claude-plugin/plugin.json).

0 replies

@stanislavjiricek · 2026-06-26T20:31:05Z

github-actions[bot]
Bot Jun 26, 2026

@stanislavjiricek ✅ ALL GOOD — 2026-06-26 (Radar Brief ready)

Research Radar Brief — Week 26, 2026

Generated 2026-06-26 | neuroflow v0.2.20 | 36 commands · 40 skills · 9 agents

Recent changes (context for gap analysis)

Most recent versions in changelog: 0.2.20, 0.2.19, 0.2.18, 0.2.16, 0.2.15

💡 New ideas (implementation candidates)

1. LLM-assisted hypothesis generation [HIGH]

LLMs can now generate and critique scientific hypotheses; could extend /ideation
📍 Suggested location: commands/ideation.md or new /hypothesis command

2. BIDS 2.0 support [MEDIUM]

BIDS 2.0 introduces new modalities and stricter validation rules
📍 Suggested location: skills/phase-data/SKILL.md — add BIDS 2.0 validation guidance

3. Automated preregistration syncing (OSF API) [MEDIUM]

OSF has a REST API; /preregistration could auto-submit instead of guiding manually
📍 Suggested location: commands/preregistration.md — add --submit flag

4. Reproducibility checks (code + data provenance) [MEDIUM]

Growing requirement from journals; DVC or DataLad integration could help
📍 Suggested location: New skills/phase-data/section or/data command extension

5. Multi-modal fusion (EEG+fMRI, EEG+eye tracking) [LOW]

Multi-modal recording is increasingly common; neuroflow currently handles modalities separately
📍 Suggested location: New /fusioncommand or extension to/data-analyze``

6. Real-time feedback loop for BCI [LOW]

Closed-loop BCI paradigms require tight latency; /tool-build could gain BCI-specific templates
📍 Suggested location: commands/tool-build.md, skills/phase-tool-build/SKILL.md

7. NotebookLM / AI note-taking integration [HIGH]

Open issue #166 — community request; could be a new agent or /notes enhancement
📍 Suggested location: agents/ or commands/notes.md

🔍 Detected capability gaps

The following research domains have sparse coverage in current commands/skills:

EEG / iEEG
fMRI
Eye tracking
ECG / Physiology
Literature / Search
Statistics / ML

⚠️ Threats / watchlist

PubMed E-utilities API rate limits

NCBI enforces 3 req/s without API key, 10/s with key; bulk /search runs may hit limits
Mitigation: Add retry with backoff in scholar agent; surface API-key prompt in /setup

bioRxiv MCP server availability

The paper-search-mcp-nodejs package is a community package; no SLA
Mitigation: Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

Claude Code plugin API changes

Anthropic may change plugin format, hook events, or skill invocation between versions
Mitigation: Pin plugin version in .claude-plugin/plugin.json; watch Anthropic changelog

Markdown linting strictness (mkdocs-material)

mkdocs build --strict fails on warnings; new docs may break CI if not checked locally
Mitigation: Add a pre-commit hook or local mkdocs build --strict alias in contributing docs

📋 Proposed backlog entries

These are proposals only — no PRs will be opened by this workflow.

[feature] LLM-assisted hypothesis generation → commands/ideation.md or new /hypothesis command
[feature] NotebookLM / AI note-taking integration → agents/ or commands/notes.md
[resilience] Add retry with backoff in scholar agent; surface API-key prompt in /setup
[resilience] Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

How this report is generated

This radar brief is generated deterministically from the repo's own content:
commands, skills, agents, and the README changelog. It does not make external web requests. Web-sourced intel can be added later by wiring an MCP search server (PubMed / bioRxiv are already configured in .claude-plugin/plugin.json).

0 replies

@stanislavjiricek · 2026-07-03T20:22:52Z

github-actions[bot]
Bot Jul 3, 2026

@stanislavjiricek ✅ ALL GOOD — 2026-07-03 (Radar Brief ready)

Research Radar Brief — Week 27, 2026

Generated 2026-07-03 | neuroflow v0.2.20 | 36 commands · 40 skills · 9 agents

Recent changes (context for gap analysis)

Most recent versions in changelog: 0.2.20, 0.2.19, 0.2.18, 0.2.16, 0.2.15

💡 New ideas (implementation candidates)

1. LLM-assisted hypothesis generation [HIGH]

LLMs can now generate and critique scientific hypotheses; could extend /ideation
📍 Suggested location: commands/ideation.md or new /hypothesis command

2. BIDS 2.0 support [MEDIUM]

BIDS 2.0 introduces new modalities and stricter validation rules
📍 Suggested location: skills/phase-data/SKILL.md — add BIDS 2.0 validation guidance

3. Automated preregistration syncing (OSF API) [MEDIUM]

OSF has a REST API; /preregistration could auto-submit instead of guiding manually
📍 Suggested location: commands/preregistration.md — add --submit flag

4. Reproducibility checks (code + data provenance) [MEDIUM]

Growing requirement from journals; DVC or DataLad integration could help
📍 Suggested location: New skills/phase-data/section or/data command extension

5. Multi-modal fusion (EEG+fMRI, EEG+eye tracking) [LOW]

Multi-modal recording is increasingly common; neuroflow currently handles modalities separately
📍 Suggested location: New /fusioncommand or extension to/data-analyze``

6. Real-time feedback loop for BCI [LOW]

Closed-loop BCI paradigms require tight latency; /tool-build could gain BCI-specific templates
📍 Suggested location: commands/tool-build.md, skills/phase-tool-build/SKILL.md

7. NotebookLM / AI note-taking integration [HIGH]

Open issue #166 — community request; could be a new agent or /notes enhancement
📍 Suggested location: agents/ or commands/notes.md

🔍 Detected capability gaps

The following research domains have sparse coverage in current commands/skills:

EEG / iEEG
fMRI
Eye tracking
ECG / Physiology
Literature / Search
Statistics / ML

⚠️ Threats / watchlist

PubMed E-utilities API rate limits

NCBI enforces 3 req/s without API key, 10/s with key; bulk /search runs may hit limits
Mitigation: Add retry with backoff in scholar agent; surface API-key prompt in /setup

bioRxiv MCP server availability

The paper-search-mcp-nodejs package is a community package; no SLA
Mitigation: Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

Claude Code plugin API changes

Anthropic may change plugin format, hook events, or skill invocation between versions
Mitigation: Pin plugin version in .claude-plugin/plugin.json; watch Anthropic changelog

Markdown linting strictness (mkdocs-material)

mkdocs build --strict fails on warnings; new docs may break CI if not checked locally
Mitigation: Add a pre-commit hook or local mkdocs build --strict alias in contributing docs

📋 Proposed backlog entries

These are proposals only — no PRs will be opened by this workflow.

[feature] LLM-assisted hypothesis generation → commands/ideation.md or new /hypothesis command
[feature] NotebookLM / AI note-taking integration → agents/ or commands/notes.md
[resilience] Add retry with backoff in scholar agent; surface API-key prompt in /setup
[resilience] Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

How this report is generated

This radar brief is generated deterministically from the repo's own content:
commands, skills, agents, and the README changelog. It does not make external web requests. Web-sourced intel can be added later by wiring an MCP search server (PubMed / bioRxiv are already configured in .claude-plugin/plugin.json).

0 replies

@stanislavjiricek · 2026-07-10T20:28:19Z

github-actions[bot]
Bot Jul 10, 2026

@stanislavjiricek ✅ ALL GOOD — 2026-07-10 (Radar Brief ready)

Research Radar Brief — Week 28, 2026

Generated 2026-07-10 | neuroflow v0.2.20 | 36 commands · 40 skills · 9 agents

Recent changes (context for gap analysis)

Most recent versions in changelog: 0.2.20, 0.2.19, 0.2.18, 0.2.16, 0.2.15

💡 New ideas (implementation candidates)

1. LLM-assisted hypothesis generation [HIGH]

LLMs can now generate and critique scientific hypotheses; could extend /ideation
📍 Suggested location: commands/ideation.md or new /hypothesis command

2. BIDS 2.0 support [MEDIUM]

BIDS 2.0 introduces new modalities and stricter validation rules
📍 Suggested location: skills/phase-data/SKILL.md — add BIDS 2.0 validation guidance

3. Automated preregistration syncing (OSF API) [MEDIUM]

OSF has a REST API; /preregistration could auto-submit instead of guiding manually
📍 Suggested location: commands/preregistration.md — add --submit flag

4. Reproducibility checks (code + data provenance) [MEDIUM]

Growing requirement from journals; DVC or DataLad integration could help
📍 Suggested location: New skills/phase-data/section or/data command extension

5. Multi-modal fusion (EEG+fMRI, EEG+eye tracking) [LOW]

Multi-modal recording is increasingly common; neuroflow currently handles modalities separately
📍 Suggested location: New /fusioncommand or extension to/data-analyze``

6. Real-time feedback loop for BCI [LOW]

Closed-loop BCI paradigms require tight latency; /tool-build could gain BCI-specific templates
📍 Suggested location: commands/tool-build.md, skills/phase-tool-build/SKILL.md

7. NotebookLM / AI note-taking integration [HIGH]

Open issue #166 — community request; could be a new agent or /notes enhancement
📍 Suggested location: agents/ or commands/notes.md

🔍 Detected capability gaps

The following research domains have sparse coverage in current commands/skills:

EEG / iEEG
fMRI
Eye tracking
ECG / Physiology
Literature / Search
Statistics / ML

⚠️ Threats / watchlist

PubMed E-utilities API rate limits

NCBI enforces 3 req/s without API key, 10/s with key; bulk /search runs may hit limits
Mitigation: Add retry with backoff in scholar agent; surface API-key prompt in /setup

bioRxiv MCP server availability

The paper-search-mcp-nodejs package is a community package; no SLA
Mitigation: Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

Claude Code plugin API changes

Anthropic may change plugin format, hook events, or skill invocation between versions
Mitigation: Pin plugin version in .claude-plugin/plugin.json; watch Anthropic changelog

Markdown linting strictness (mkdocs-material)

mkdocs build --strict fails on warnings; new docs may break CI if not checked locally
Mitigation: Add a pre-commit hook or local mkdocs build --strict alias in contributing docs

📋 Proposed backlog entries

These are proposals only — no PRs will be opened by this workflow.

[feature] LLM-assisted hypothesis generation → commands/ideation.md or new /hypothesis command
[feature] NotebookLM / AI note-taking integration → agents/ or commands/notes.md
[resilience] Add retry with backoff in scholar agent; surface API-key prompt in /setup
[resilience] Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

How this report is generated

This radar brief is generated deterministically from the repo's own content:
commands, skills, agents, and the README changelog. It does not make external web requests. Web-sourced intel can be added later by wiring an MCP search server (PubMed / bioRxiv are already configured in .claude-plugin/plugin.json).

0 replies

@stanislavjiricek · 2026-07-17T20:17:34Z

github-actions[bot]
Bot Jul 17, 2026

@stanislavjiricek ✅ ALL GOOD — 2026-07-17 (Radar Brief ready)

Research Radar Brief — Week 29, 2026

Generated 2026-07-17 | neuroflow v0.2.20 | 36 commands · 40 skills · 9 agents

Recent changes (context for gap analysis)

Most recent versions in changelog: 0.2.20, 0.2.19, 0.2.18, 0.2.16, 0.2.15

💡 New ideas (implementation candidates)

1. LLM-assisted hypothesis generation [HIGH]

LLMs can now generate and critique scientific hypotheses; could extend /ideation
📍 Suggested location: commands/ideation.md or new /hypothesis command

2. BIDS 2.0 support [MEDIUM]

BIDS 2.0 introduces new modalities and stricter validation rules
📍 Suggested location: skills/phase-data/SKILL.md — add BIDS 2.0 validation guidance

3. Automated preregistration syncing (OSF API) [MEDIUM]

OSF has a REST API; /preregistration could auto-submit instead of guiding manually
📍 Suggested location: commands/preregistration.md — add --submit flag

4. Reproducibility checks (code + data provenance) [MEDIUM]

Growing requirement from journals; DVC or DataLad integration could help
📍 Suggested location: New skills/phase-data/section or/data command extension

5. Multi-modal fusion (EEG+fMRI, EEG+eye tracking) [LOW]

Multi-modal recording is increasingly common; neuroflow currently handles modalities separately
📍 Suggested location: New /fusioncommand or extension to/data-analyze``

6. Real-time feedback loop for BCI [LOW]

Closed-loop BCI paradigms require tight latency; /tool-build could gain BCI-specific templates
📍 Suggested location: commands/tool-build.md, skills/phase-tool-build/SKILL.md

7. NotebookLM / AI note-taking integration [HIGH]

Open issue #166 — community request; could be a new agent or /notes enhancement
📍 Suggested location: agents/ or commands/notes.md

🔍 Detected capability gaps

The following research domains have sparse coverage in current commands/skills:

EEG / iEEG
fMRI
Eye tracking
ECG / Physiology
Literature / Search
Statistics / ML

⚠️ Threats / watchlist

PubMed E-utilities API rate limits

NCBI enforces 3 req/s without API key, 10/s with key; bulk /search runs may hit limits
Mitigation: Add retry with backoff in scholar agent; surface API-key prompt in /setup

bioRxiv MCP server availability

The paper-search-mcp-nodejs package is a community package; no SLA
Mitigation: Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

Claude Code plugin API changes

Anthropic may change plugin format, hook events, or skill invocation between versions
Mitigation: Pin plugin version in .claude-plugin/plugin.json; watch Anthropic changelog

Markdown linting strictness (mkdocs-material)

mkdocs build --strict fails on warnings; new docs may break CI if not checked locally
Mitigation: Add a pre-commit hook or local mkdocs build --strict alias in contributing docs

📋 Proposed backlog entries

These are proposals only — no PRs will be opened by this workflow.

[feature] LLM-assisted hypothesis generation → commands/ideation.md or new /hypothesis command
[feature] NotebookLM / AI note-taking integration → agents/ or commands/notes.md
[resilience] Add retry with backoff in scholar agent; surface API-key prompt in /setup
[resilience] Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

How this report is generated

This radar brief is generated deterministically from the repo's own content:
commands, skills, agents, and the README changelog. It does not make external web requests. Web-sourced intel can be added later by wiring an MCP search server (PubMed / bioRxiv are already configured in .claude-plugin/plugin.json).

0 replies

@stanislavjiricek · 2026-07-24T20:27:14Z

github-actions[bot]
Bot Jul 24, 2026

@stanislavjiricek ✅ ALL GOOD — 2026-07-24 (Radar Brief ready)

Research Radar Brief — Week 30, 2026

Generated 2026-07-24 | neuroflow v0.2.20 | 36 commands · 40 skills · 9 agents

Recent changes (context for gap analysis)

Most recent versions in changelog: 0.2.20, 0.2.19, 0.2.18, 0.2.16, 0.2.15

💡 New ideas (implementation candidates)

1. LLM-assisted hypothesis generation [HIGH]

LLMs can now generate and critique scientific hypotheses; could extend /ideation
📍 Suggested location: commands/ideation.md or new /hypothesis command

2. BIDS 2.0 support [MEDIUM]

BIDS 2.0 introduces new modalities and stricter validation rules
📍 Suggested location: skills/phase-data/SKILL.md — add BIDS 2.0 validation guidance

3. Automated preregistration syncing (OSF API) [MEDIUM]

OSF has a REST API; /preregistration could auto-submit instead of guiding manually
📍 Suggested location: commands/preregistration.md — add --submit flag

4. Reproducibility checks (code + data provenance) [MEDIUM]

Growing requirement from journals; DVC or DataLad integration could help
📍 Suggested location: New skills/phase-data/section or/data command extension

5. Multi-modal fusion (EEG+fMRI, EEG+eye tracking) [LOW]

Multi-modal recording is increasingly common; neuroflow currently handles modalities separately
📍 Suggested location: New /fusioncommand or extension to/data-analyze``

6. Real-time feedback loop for BCI [LOW]

Closed-loop BCI paradigms require tight latency; /tool-build could gain BCI-specific templates
📍 Suggested location: commands/tool-build.md, skills/phase-tool-build/SKILL.md

7. NotebookLM / AI note-taking integration [HIGH]

Open issue #166 — community request; could be a new agent or /notes enhancement
📍 Suggested location: agents/ or commands/notes.md

🔍 Detected capability gaps

The following research domains have sparse coverage in current commands/skills:

EEG / iEEG
fMRI
Eye tracking
ECG / Physiology
Literature / Search
Statistics / ML

⚠️ Threats / watchlist

PubMed E-utilities API rate limits

NCBI enforces 3 req/s without API key, 10/s with key; bulk /search runs may hit limits
Mitigation: Add retry with backoff in scholar agent; surface API-key prompt in /setup

bioRxiv MCP server availability

The paper-search-mcp-nodejs package is a community package; no SLA
Mitigation: Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

Claude Code plugin API changes

Anthropic may change plugin format, hook events, or skill invocation between versions
Mitigation: Pin plugin version in .claude-plugin/plugin.json; watch Anthropic changelog

Markdown linting strictness (mkdocs-material)

mkdocs build --strict fails on warnings; new docs may break CI if not checked locally
Mitigation: Add a pre-commit hook or local mkdocs build --strict alias in contributing docs

📋 Proposed backlog entries

These are proposals only — no PRs will be opened by this workflow.

[feature] LLM-assisted hypothesis generation → commands/ideation.md or new /hypothesis command
[feature] NotebookLM / AI note-taking integration → agents/ or commands/notes.md
[resilience] Add retry with backoff in scholar agent; surface API-key prompt in /setup
[resilience] Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

How this report is generated

This radar brief is generated deterministically from the repo's own content:
commands, skills, agents, and the README changelog. It does not make external web requests. Web-sourced intel can be added later by wiring an MCP search server (PubMed / bioRxiv are already configured in .claude-plugin/plugin.json).

0 replies

@stanislavjiricek · 2026-07-31T20:26:26Z

github-actions[bot]
Bot Jul 31, 2026

@stanislavjiricek ✅ ALL GOOD — 2026-07-31 (Radar Brief ready)

Research Radar Brief — Week 31, 2026

Generated 2026-07-31 | neuroflow v0.2.20 | 36 commands · 40 skills · 9 agents

Recent changes (context for gap analysis)

Most recent versions in changelog: 0.2.20, 0.2.19, 0.2.18, 0.2.16, 0.2.15

💡 New ideas (implementation candidates)

1. LLM-assisted hypothesis generation [HIGH]

LLMs can now generate and critique scientific hypotheses; could extend /ideation
📍 Suggested location: commands/ideation.md or new /hypothesis command

2. BIDS 2.0 support [MEDIUM]

BIDS 2.0 introduces new modalities and stricter validation rules
📍 Suggested location: skills/phase-data/SKILL.md — add BIDS 2.0 validation guidance

3. Automated preregistration syncing (OSF API) [MEDIUM]

OSF has a REST API; /preregistration could auto-submit instead of guiding manually
📍 Suggested location: commands/preregistration.md — add --submit flag

4. Reproducibility checks (code + data provenance) [MEDIUM]

Growing requirement from journals; DVC or DataLad integration could help
📍 Suggested location: New skills/phase-data/section or/data command extension

5. Multi-modal fusion (EEG+fMRI, EEG+eye tracking) [LOW]

Multi-modal recording is increasingly common; neuroflow currently handles modalities separately
📍 Suggested location: New /fusioncommand or extension to/data-analyze``

6. Real-time feedback loop for BCI [LOW]

Closed-loop BCI paradigms require tight latency; /tool-build could gain BCI-specific templates
📍 Suggested location: commands/tool-build.md, skills/phase-tool-build/SKILL.md

7. NotebookLM / AI note-taking integration [HIGH]

Open issue #166 — community request; could be a new agent or /notes enhancement
📍 Suggested location: agents/ or commands/notes.md

🔍 Detected capability gaps

The following research domains have sparse coverage in current commands/skills:

EEG / iEEG
fMRI
Eye tracking
ECG / Physiology
Literature / Search
Statistics / ML

⚠️ Threats / watchlist

PubMed E-utilities API rate limits

NCBI enforces 3 req/s without API key, 10/s with key; bulk /search runs may hit limits
Mitigation: Add retry with backoff in scholar agent; surface API-key prompt in /setup

bioRxiv MCP server availability

The paper-search-mcp-nodejs package is a community package; no SLA
Mitigation: Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

Claude Code plugin API changes

Anthropic may change plugin format, hook events, or skill invocation between versions
Mitigation: Pin plugin version in .claude-plugin/plugin.json; watch Anthropic changelog

Markdown linting strictness (mkdocs-material)

mkdocs build --strict fails on warnings; new docs may break CI if not checked locally
Mitigation: Add a pre-commit hook or local mkdocs build --strict alias in contributing docs

📋 Proposed backlog entries

These are proposals only — no PRs will be opened by this workflow.

[feature] LLM-assisted hypothesis generation → commands/ideation.md or new /hypothesis command
[feature] NotebookLM / AI note-taking integration → agents/ or commands/notes.md
[resilience] Add retry with backoff in scholar agent; surface API-key prompt in /setup
[resilience] Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

How this report is generated

This radar brief is generated deterministically from the repo's own content:
commands, skills, agents, and the README changelog. It does not make external web requests. Web-sourced intel can be added later by wiring an MCP search server (PubMed / bioRxiv are already configured in .claude-plugin/plugin.json).

0 replies

@stanislavjiricek · 2026-08-07T20:10:49Z

github-actions[bot]
Bot Aug 7, 2026

@stanislavjiricek ✅ ALL GOOD — 2026-08-07 (Radar Brief ready)

Research Radar Brief — Week 32, 2026

Generated 2026-08-07 | neuroflow v0.2.20 | 36 commands · 40 skills · 9 agents

Recent changes (context for gap analysis)

Most recent versions in changelog: 0.2.20, 0.2.19, 0.2.18, 0.2.16, 0.2.15

💡 New ideas (implementation candidates)

1. LLM-assisted hypothesis generation [HIGH]

LLMs can now generate and critique scientific hypotheses; could extend /ideation
📍 Suggested location: commands/ideation.md or new /hypothesis command

2. BIDS 2.0 support [MEDIUM]

BIDS 2.0 introduces new modalities and stricter validation rules
📍 Suggested location: skills/phase-data/SKILL.md — add BIDS 2.0 validation guidance

3. Automated preregistration syncing (OSF API) [MEDIUM]

OSF has a REST API; /preregistration could auto-submit instead of guiding manually
📍 Suggested location: commands/preregistration.md — add --submit flag

4. Reproducibility checks (code + data provenance) [MEDIUM]

Growing requirement from journals; DVC or DataLad integration could help
📍 Suggested location: New skills/phase-data/section or/data command extension

5. Multi-modal fusion (EEG+fMRI, EEG+eye tracking) [LOW]

Multi-modal recording is increasingly common; neuroflow currently handles modalities separately
📍 Suggested location: New /fusioncommand or extension to/data-analyze``

6. Real-time feedback loop for BCI [LOW]

Closed-loop BCI paradigms require tight latency; /tool-build could gain BCI-specific templates
📍 Suggested location: commands/tool-build.md, skills/phase-tool-build/SKILL.md

7. NotebookLM / AI note-taking integration [HIGH]

Open issue #166 — community request; could be a new agent or /notes enhancement
📍 Suggested location: agents/ or commands/notes.md

🔍 Detected capability gaps

The following research domains have sparse coverage in current commands/skills:

EEG / iEEG
fMRI
Eye tracking
ECG / Physiology
Literature / Search
Statistics / ML

⚠️ Threats / watchlist

PubMed E-utilities API rate limits

NCBI enforces 3 req/s without API key, 10/s with key; bulk /search runs may hit limits
Mitigation: Add retry with backoff in scholar agent; surface API-key prompt in /setup

bioRxiv MCP server availability

The paper-search-mcp-nodejs package is a community package; no SLA
Mitigation: Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

Claude Code plugin API changes

Anthropic may change plugin format, hook events, or skill invocation between versions
Mitigation: Pin plugin version in .claude-plugin/plugin.json; watch Anthropic changelog

Markdown linting strictness (mkdocs-material)

mkdocs build --strict fails on warnings; new docs may break CI if not checked locally
Mitigation: Add a pre-commit hook or local mkdocs build --strict alias in contributing docs

📋 Proposed backlog entries

These are proposals only — no PRs will be opened by this workflow.

[feature] LLM-assisted hypothesis generation → commands/ideation.md or new /hypothesis command
[feature] NotebookLM / AI note-taking integration → agents/ or commands/notes.md
[resilience] Add retry with backoff in scholar agent; surface API-key prompt in /setup
[resilience] Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

How this report is generated

This radar brief is generated deterministically from the repo's own content:
commands, skills, agents, and the README changelog. It does not make external web requests. Web-sourced intel can be added later by wiring an MCP search server (PubMed / bioRxiv are already configured in .claude-plugin/plugin.json).

0 replies

@stanislavjiricek · 2026-08-14T20:08:26Z

github-actions[bot]
Bot Aug 14, 2026

@stanislavjiricek ✅ ALL GOOD — 2026-08-14 (Radar Brief ready)

Research Radar Brief — Week 33, 2026

Generated 2026-08-14 | neuroflow v0.2.21 | 38 commands · 40 skills · 9 agents

Recent changes (context for gap analysis)

Most recent versions in changelog: 0.2.21, 0.2.20, 0.2.19, 0.2.18, 0.2.16

💡 New ideas (implementation candidates)

1. LLM-assisted hypothesis generation [HIGH]

LLMs can now generate and critique scientific hypotheses; could extend /ideation
📍 Suggested location: commands/ideation.md or new /hypothesis command

2. BIDS 2.0 support [MEDIUM]

BIDS 2.0 introduces new modalities and stricter validation rules
📍 Suggested location: skills/phase-data/SKILL.md — add BIDS 2.0 validation guidance

3. Automated preregistration syncing (OSF API) [MEDIUM]

OSF has a REST API; /preregistration could auto-submit instead of guiding manually
📍 Suggested location: commands/preregistration.md — add --submit flag

4. Reproducibility checks (code + data provenance) [MEDIUM]

Growing requirement from journals; DVC or DataLad integration could help
📍 Suggested location: New skills/phase-data/section or/data command extension

5. Multi-modal fusion (EEG+fMRI, EEG+eye tracking) [LOW]

Multi-modal recording is increasingly common; neuroflow currently handles modalities separately
📍 Suggested location: New /fusioncommand or extension to/data-analyze``

6. Real-time feedback loop for BCI [LOW]

Closed-loop BCI paradigms require tight latency; /tool-build could gain BCI-specific templates
📍 Suggested location: commands/tool-build.md, skills/phase-tool-build/SKILL.md

7. NotebookLM / AI note-taking integration [HIGH]

Open issue #166 — community request; could be a new agent or /notes enhancement
📍 Suggested location: agents/ or commands/notes.md

🔍 Detected capability gaps

The following research domains have sparse coverage in current commands/skills:

EEG / iEEG
fMRI
Eye tracking
ECG / Physiology
Literature / Search
Statistics / ML

⚠️ Threats / watchlist

PubMed E-utilities API rate limits

NCBI enforces 3 req/s without API key, 10/s with key; bulk /search runs may hit limits
Mitigation: Add retry with backoff in scholar agent; surface API-key prompt in /setup

bioRxiv MCP server availability

The paper-search-mcp-nodejs package is a community package; no SLA
Mitigation: Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

Claude Code plugin API changes

Anthropic may change plugin format, hook events, or skill invocation between versions
Mitigation: Pin plugin version in .claude-plugin/plugin.json; watch Anthropic changelog

Markdown linting strictness (mkdocs-material)

mkdocs build --strict fails on warnings; new docs may break CI if not checked locally
Mitigation: Add a pre-commit hook or local mkdocs build --strict alias in contributing docs

📋 Proposed backlog entries

These are proposals only — no PRs will be opened by this workflow.

[feature] LLM-assisted hypothesis generation → commands/ideation.md or new /hypothesis command
[feature] NotebookLM / AI note-taking integration → agents/ or commands/notes.md
[resilience] Add retry with backoff in scholar agent; surface API-key prompt in /setup
[resilience] Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

How this report is generated

This radar brief is generated deterministically from the repo's own content:
commands, skills, agents, and the README changelog. It does not make external web requests. Web-sourced intel can be added later by wiring an MCP search server (PubMed / bioRxiv are already configured in .claude-plugin/plugin.json).

0 replies

@stanislavjiricek · 2026-08-21T20:02:50Z

github-actions[bot]
Bot Aug 21, 2026

@stanislavjiricek ✅ ALL GOOD — 2026-08-21 (Radar Brief ready)

Research Radar Brief — Week 34, 2026

Generated 2026-08-21 | neuroflow v0.2.21 | 38 commands · 40 skills · 9 agents

Recent changes (context for gap analysis)

Most recent versions in changelog: 0.2.21, 0.2.20, 0.2.19, 0.2.18, 0.2.16

💡 New ideas (implementation candidates)

1. LLM-assisted hypothesis generation [HIGH]

LLMs can now generate and critique scientific hypotheses; could extend /ideation
📍 Suggested location: commands/ideation.md or new /hypothesis command

2. BIDS 2.0 support [MEDIUM]

BIDS 2.0 introduces new modalities and stricter validation rules
📍 Suggested location: skills/phase-data/SKILL.md — add BIDS 2.0 validation guidance

3. Automated preregistration syncing (OSF API) [MEDIUM]

OSF has a REST API; /preregistration could auto-submit instead of guiding manually
📍 Suggested location: commands/preregistration.md — add --submit flag

4. Reproducibility checks (code + data provenance) [MEDIUM]

Growing requirement from journals; DVC or DataLad integration could help
📍 Suggested location: New skills/phase-data/section or/data command extension

5. Multi-modal fusion (EEG+fMRI, EEG+eye tracking) [LOW]

Multi-modal recording is increasingly common; neuroflow currently handles modalities separately
📍 Suggested location: New /fusioncommand or extension to/data-analyze``

6. Real-time feedback loop for BCI [LOW]

Closed-loop BCI paradigms require tight latency; /tool-build could gain BCI-specific templates
📍 Suggested location: commands/tool-build.md, skills/phase-tool-build/SKILL.md

7. NotebookLM / AI note-taking integration [HIGH]

Open issue #166 — community request; could be a new agent or /notes enhancement
📍 Suggested location: agents/ or commands/notes.md

🔍 Detected capability gaps

The following research domains have sparse coverage in current commands/skills:

EEG / iEEG
fMRI
Eye tracking
ECG / Physiology
Literature / Search
Statistics / ML

⚠️ Threats / watchlist

PubMed E-utilities API rate limits

NCBI enforces 3 req/s without API key, 10/s with key; bulk /search runs may hit limits
Mitigation: Add retry with backoff in scholar agent; surface API-key prompt in /setup

bioRxiv MCP server availability

The paper-search-mcp-nodejs package is a community package; no SLA
Mitigation: Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

Claude Code plugin API changes

Anthropic may change plugin format, hook events, or skill invocation between versions
Mitigation: Pin plugin version in .claude-plugin/plugin.json; watch Anthropic changelog

Markdown linting strictness (mkdocs-material)

mkdocs build --strict fails on warnings; new docs may break CI if not checked locally
Mitigation: Add a pre-commit hook or local mkdocs build --strict alias in contributing docs

📋 Proposed backlog entries

These are proposals only — no PRs will be opened by this workflow.

[feature] LLM-assisted hypothesis generation → commands/ideation.md or new /hypothesis command
[feature] NotebookLM / AI note-taking integration → agents/ or commands/notes.md
[resilience] Add retry with backoff in scholar agent; surface API-key prompt in /setup
[resilience] Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

How this report is generated

This radar brief is generated deterministically from the repo's own content:
commands, skills, agents, and the README changelog. It does not make external web requests. Web-sourced intel can be added later by wiring an MCP search server (PubMed / bioRxiv are already configured in .claude-plugin/plugin.json).

0 replies

@stanislavjiricek · 2026-08-28T21:55:52Z

github-actions[bot]
Bot Aug 28, 2026

@stanislavjiricek ✅ ALL GOOD — 2026-08-28 (Radar Brief ready)

Research Radar Brief — Week 35, 2026

Generated 2026-08-28 | neuroflow v0.2.21 | 38 commands · 40 skills · 9 agents

Recent changes (context for gap analysis)

Most recent versions in changelog: 0.2.21, 0.2.20, 0.2.19, 0.2.18, 0.2.16

💡 New ideas (implementation candidates)

1. LLM-assisted hypothesis generation [HIGH]

LLMs can now generate and critique scientific hypotheses; could extend /ideation
📍 Suggested location: commands/ideation.md or new /hypothesis command

2. BIDS 2.0 support [MEDIUM]

BIDS 2.0 introduces new modalities and stricter validation rules
📍 Suggested location: skills/phase-data/SKILL.md — add BIDS 2.0 validation guidance

3. Automated preregistration syncing (OSF API) [MEDIUM]

OSF has a REST API; /preregistration could auto-submit instead of guiding manually
📍 Suggested location: commands/preregistration.md — add --submit flag

4. Reproducibility checks (code + data provenance) [MEDIUM]

Growing requirement from journals; DVC or DataLad integration could help
📍 Suggested location: New skills/phase-data/section or/data command extension

5. Multi-modal fusion (EEG+fMRI, EEG+eye tracking) [LOW]

Multi-modal recording is increasingly common; neuroflow currently handles modalities separately
📍 Suggested location: New /fusioncommand or extension to/data-analyze``

6. Real-time feedback loop for BCI [LOW]

Closed-loop BCI paradigms require tight latency; /tool-build could gain BCI-specific templates
📍 Suggested location: commands/tool-build.md, skills/phase-tool-build/SKILL.md

7. NotebookLM / AI note-taking integration [HIGH]

Open issue #166 — community request; could be a new agent or /notes enhancement
📍 Suggested location: agents/ or commands/notes.md

🔍 Detected capability gaps

The following research domains have sparse coverage in current commands/skills:

EEG / iEEG
fMRI
Eye tracking
ECG / Physiology
Literature / Search
Statistics / ML

⚠️ Threats / watchlist

PubMed E-utilities API rate limits

NCBI enforces 3 req/s without API key, 10/s with key; bulk /search runs may hit limits
Mitigation: Add retry with backoff in scholar agent; surface API-key prompt in /setup

bioRxiv MCP server availability

The paper-search-mcp-nodejs package is a community package; no SLA
Mitigation: Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

Claude Code plugin API changes

Anthropic may change plugin format, hook events, or skill invocation between versions
Mitigation: Pin plugin version in .claude-plugin/plugin.json; watch Anthropic changelog

Markdown linting strictness (mkdocs-material)

mkdocs build --strict fails on warnings; new docs may break CI if not checked locally
Mitigation: Add a pre-commit hook or local mkdocs build --strict alias in contributing docs

📋 Proposed backlog entries

These are proposals only — no PRs will be opened by this workflow.

[feature] LLM-assisted hypothesis generation → commands/ideation.md or new /hypothesis command
[feature] NotebookLM / AI note-taking integration → agents/ or commands/notes.md
[resilience] Add retry with backoff in scholar agent; surface API-key prompt in /setup
[resilience] Add fallback to direct bioRxiv REST API (https://api.biorxiv.org/) if MCP fails

How this report is generated

This radar brief is generated deterministically from the repo's own content:
commands, skills, agents, and the README changelog. It does not make external web requests. Web-sourced intel can be added later by wiring an MCP search server (PubMed / bioRxiv are already configured in .claude-plugin/plugin.json).

0 replies

Research Radar #169

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stanislavjiricek Mar 13, 2026 Maintainer

Replies: 26 comments

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github-actions[bot] Bot Mar 13, 2026

Research Radar Brief — Week 11, 2026

Recent changes (context for gap analysis)

💡 New ideas (implementation candidates)

🔍 Detected capability gaps

⚠️ Threats / watchlist

📋 Proposed backlog entries

Uh oh!

github-actions[bot] Bot Mar 13, 2026

Research Radar Brief — Week 11, 2026

Recent changes (context for gap analysis)

💡 New ideas (implementation candidates)

🔍 Detected capability gaps

⚠️ Threats / watchlist

📋 Proposed backlog entries

Uh oh!

github-actions[bot] Bot Mar 20, 2026

Research Radar Brief — Week 12, 2026

Recent changes (context for gap analysis)

💡 New ideas (implementation candidates)

🔍 Detected capability gaps

⚠️ Threats / watchlist

📋 Proposed backlog entries

Uh oh!

github-actions[bot] Bot Mar 27, 2026

Research Radar Brief — Week 13, 2026

Recent changes (context for gap analysis)

💡 New ideas (implementation candidates)

🔍 Detected capability gaps

⚠️ Threats / watchlist

📋 Proposed backlog entries

Uh oh!

github-actions[bot] Bot Apr 3, 2026

Research Radar Brief — Week 14, 2026

Recent changes (context for gap analysis)

💡 New ideas (implementation candidates)

🔍 Detected capability gaps

⚠️ Threats / watchlist

📋 Proposed backlog entries

Uh oh!

github-actions[bot] Bot Apr 10, 2026

Research Radar Brief — Week 15, 2026

Recent changes (context for gap analysis)

💡 New ideas (implementation candidates)

🔍 Detected capability gaps

⚠️ Threats / watchlist

📋 Proposed backlog entries

Uh oh!

github-actions[bot] Bot Apr 17, 2026

Research Radar Brief — Week 16, 2026

Recent changes (context for gap analysis)

💡 New ideas (implementation candidates)

🔍 Detected capability gaps

⚠️ Threats / watchlist

📋 Proposed backlog entries

Uh oh!

github-actions[bot] Bot Apr 24, 2026

Research Radar Brief — Week 17, 2026

Recent changes (context for gap analysis)

💡 New ideas (implementation candidates)

🔍 Detected capability gaps

⚠️ Threats / watchlist

📋 Proposed backlog entries

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github-actions[bot] Bot May 1, 2026

Research Radar Brief — Week 18, 2026

Recent changes (context for gap analysis)

💡 New ideas (implementation candidates)

🔍 Detected capability gaps

⚠️ Threats / watchlist

📋 Proposed backlog entries

Uh oh!

github-actions[bot] Bot May 8, 2026

Research Radar Brief — Week 19, 2026

Recent changes (context for gap analysis)

stanislavjiricek
Mar 13, 2026
Maintainer

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