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Consensus Secondary Structure Predictor Engaging Structural Alignment-based Error Correction
Integer programming based prediction of RNA secondary structures with pseudoknots
Open source code for AlphaFold 2.
This package contains deep learning models and related scripts for RoseTTAFold
Based off of the official Rostlab & PredictProtein website installation, as of 2020-09-07, the produced Docker image from this repository will result in a fully functioning predictprotein suite, in…
A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.
open source protein-structure modeling tools
Pseudo-torsion angle visualization and motif-based structure comparison of nucleic acids
Prior Knowledge Facilitates Low Homologous Protein Secondary Structure Prediction with DSM Distillation
A program for generating paired MSAs for protein-protein interactions
Secondary structure prediction of long non-coding RNA: review and experimental comparison of existing approaches, L.A. Bugnon, A.A. Edera, S. Prochetto, M. Gerard, J. Raad, E. Fenoy, M. Rubiolo, U.…
RAFFT: RNA structure and folding dynamics predictions using the fast Fourier transform
Improving RNA structure prediction through multitask learning on diverse crowdsourced data.
SPOT-RNA-2D: Predicting RNA distance-based contact maps by integrated deep learning on physics-inferred base-pairing and evolutionary-derived coupling
Foldseek enables fast and sensitive comparisons of large structure sets.
The standalone version of SPOT-1D-Single available for public use for research purposes.
Simplistic 3D dictionary of amino acids using geometric shapes for UCSF Chimera
Example scripts for navigating protein sequence structure function space.