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v0.1.0-beta.16

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@stevenweaver stevenweaver released this 19 Feb 00:06
· 199 commits to main since this release
v0.1.0-beta.16
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What's New

PRIME Method Support

  • Added PRIME (PRoperty Informed Models of Evolution) for detecting property-dependent selection at individual sites
  • Supports S-PRIME variant with G-PRIME and E-PRIME marked as coming soon
  • Configurable property sets (5PROP, 4PROP, 3PROP, 2PROP, Atchley, LCAP), branch selection, and impute states options
  • Full frontend (WASM) and backend (Socket.IO) support

Local HyPhy WASM Build

  • Bundled HyPhy WASM 2.5.94 locally instead of loading from external CDN
  • Self-contained deployment — no external domain dependencies for WASM execution
  • Versioned directory structure (static/wasm/hyphy/2.5.94/) for easy future updates

WASM Execution Fixes

  • Fixed LIBPATH for new WASM build (/res/ instead of /shared/hyphy/)
  • Use explicit batch file paths to avoid Emscripten stale state issues between analysis runs
  • Always pass --branches explicitly to prevent argument parsing corruption
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