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v0.2.0

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@OberonDixon OberonDixon released this 13 Jun 19:04
· 33 commits to main since this release
v0.2.0
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Learn about vigilant mode.

v0.2.0 is a major overhaul compared to v0.1.0. It supports the same core pileup and single read extraction operations as the original dimelo v0.1.0 package, but focuses on a number of new objectives:

  • Support multicolor data / any base modification context (GpC, CpC, etc)
  • Vector extraction for all data types
  • Enhanced speed and reliability, enabling e.g. whole genome processing
  • Maintainability -> using a small number of standard dependencies, outsourcing as much as possible to well-maintained third-party packages (e.g. modkit, pysam, h5py, and a few others)
  • Modularity in both architecture and operation
  • Ease of use, especially for multiplatform installation
  • More powerful plotting e.g. bam files from different basecallers, single read sorting, rapid iteration
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