Option A: E. Coli The K12 E. Coli strain was the first strain of E. Coli to have its genome sequenced. This program automates the collection, assembly, and annotation of the E. coli K-12 sequences using software such as SPAdes, bowtie, tophat, and cufflinks.
Pre-Reqs: Python 3, Linux, SPAdes, bowtie, tophat, cufflinks
This script should run automatically