SOA BRIDGE

This repository is a set of scripts and output to build on top of the excellent work by JozefAerts.

The input is taken in and a few patches are applied to the content and it is split out by patient.

This can then be augmented elements on an adhoc basis:

• Current implementation is using the SV dataset to generate encounters

Installation

1. Install Poetry (https://python-poetry.org/docs/#installation)
2. Clone the repository

git clone https://github.com/glow-mdsol/soa-bridge-match

3. Install the requirements

poetry install

Generating the files.

To regenerate the files, run the following command (in the upstream folder):

1. Patch the current implementation and split the content into patients

python patch_json.py LZZT_FHIR_Bundle_10_Patients_All_Resources.json

2. Merge in the visit information (it will scan all the json files in the directory)

python add_visits.py subjects