* [apps] Add `rich` library
* [apps] black format base.py
* [utils] iteritems() => items() in counter.py
* [utils] Remove progressbar.py
* [apps] Remove console.py
* [tests] make tests pass
* [assembly] revert formatting changes in ca.py
* [algorithms] Move creator to global space
* [utils] Remove counter.py
* [utils] Remove natsort.py
* [utils] Remove brewer2mpl
* [utils] memoized => lru_cache
* [annotation] Minor formatting
* [projects] minor formatting in ies.py
* [apps] minor formatting in grid.py
* [utils] ete2 => ete3 in taxonomy.py