I have an issue where t2 run spends a long time to start up, it might be related to indexing of node_modules folder before build.
I started with the t2 init project, and ran t2 run index.js. It used around 14 secs to build, deploy and run the project.
I then added the following dev-dependencies:
"babel-cli": "^6.9.0",
"babel-preset-es2015": "^6.9.0",
"babelify": "^7.3.0",
"eslint": "^2.11.1",
Without any other changes, the command t2 run index.js now used 40 secs to complete. I checked the files on the device, and the only files transferred was the index.js and package.json, as expected.