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0.1.0

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@TomMaugerBirocheau TomMaugerBirocheau released this 19 Aug 16:27
· 2 commits to main since this release

Feature:

  • Usable for all species/assembly
  • Able to create your regulatory domain
  • Able to use your ontology file or ontology file from Github
  • Get the enrichment GO terms in a set of the genomic region
  • Get the enrichment GO terms in a multi-set of genomics regions
  • Get p-values and fold enrichment for all GO terms
  • Set multiple test corrections (Bonferroni or False Discovery Ratio) to p-value
  • Set threshold on a specific column
  • Plot the number of associated genes per input genomic region
  • Plot the (absolute) distance from the genomic region to TSS
  • Plot a dotplot for the most significant GO term to show their p-value and the size of the overlapping
  • Plot a dotplot for the n most significant GO term for multiple inputs to show their p-value and the odd ratio.

Documentation: https://greatpy.readthedocs.io/en/latest/