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0.1.0
Pre-release
Pre-release
Feature:
- Usable for all species/assembly
- Able to create your regulatory domain
- Able to use your ontology file or ontology file from Github
- Get the enrichment GO terms in a set of the genomic region
- Get the enrichment GO terms in a multi-set of genomics regions
- Get p-values and fold enrichment for all GO terms
- Set multiple test corrections (Bonferroni or False Discovery Ratio) to p-value
- Set threshold on a specific column
- Plot the number of associated genes per input genomic region
- Plot the (absolute) distance from the genomic region to TSS
- Plot a dotplot for the most significant GO term to show their p-value and the size of the overlapping
- Plot a dotplot for the n most significant GO term for multiple inputs to show their p-value and the odd ratio.
Documentation: https://greatpy.readthedocs.io/en/latest/