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change all iqtree2 to iqtree3 (except "for older versions")
Update Estimating-amino-acid-substitution-models.md
update the wiki for linked exchangeabilities
move estimate protein model to 2nd column as manual
Updated Estimating amino acid substitution models (markdown)
fix links
revise the text about linked GTR
update the wiki for linked GTR exchangeabilities model
correct the command line
reconstruct layout, add rev models
Updated nQmaker (markdown)