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Welcome to your wiki! This is the default page we've installed for your convenience. Go ahead and edit it.
This wiki uses the Markdown syntax.
The wiki itself is actually a git repository, which means you can clone it, edit it locally/offline, add images or any other file type, and push it back to us. It will be live immediately.
Go ahead and try:
$ git clone https://tung_nguyen@bitbucket.org/tung_nguyen/iqtree.git/wiki
Wiki pages are normal files, with the .md extension. You can edit them locally, as well as creating new ones.
You can also highlight snippets of text (we use the excellent Pygments library).
Here's an example of some Python code:
#!python
def wiki_rocks(text):
formatter = lambda t: "funky"+t
return formatter(text)
You can check out the source of this page to see how that's done, and make sure to bookmark [the vast library of Pygment lexers][lexers], we accept the 'short name' or the 'mimetype' of anything in there. [lexers]: http://pygments.org/docs/lexers/
Have fun!
Copyright (c) 2010-2022 IQ-TREE development team.
- First example
- Model selection
- New model selection
- Codon models
- Binary, Morphological, SNPs
- Ultrafast bootstrap
- Nonparametric bootstrap
- Single branch tests
- Partitioned analysis
- Partitioning with mixed data
- Partition scheme selection
- Bootstrapping partition model
- Utilizing multi-core CPUs
- Tree topology tests
- User-defined models
- Consensus construction and bootstrap value assignment
- Computing Robinson-Foulds distance
- Generating random trees
- Estimating amino acid substitution models
- DNA models
- Protein models
- 3Di and TEA models
- Codon models
- Binary, morphological models
- Ascertainment bias correction
- Rate heterogeneity
- Counts files
- First running example
- Substitution models
- Virtual population size
- Sampling method
- Bootstrap branch support
- Interpretation of branch lengths