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Remove Content classification subsection from structural-alphabet models
Document 3Di and TEA structural-alphabet models
Updated Substitution Models (markdown)
Modified EAL and ELM matrix descriptions
Added ELM and EAL matrix from the GTRpmix model
update citations for reversible Q matrix
fix NQ matrix entries
add citation for strand symmetric model
add FLAVI and re-order protein matrices in alphabet
fix Q.plant appear 2x and add Q.insect, thanks Lars
add new Q matrices
remove strange first code
Revising AliSim user manual
Adding simulating multi-genes alignment Fixing grammar mistakes
Update AliSim homepage and minor changes in Substitution-Models
Adding continuous Gamma model
Adding AliSim Wiki, updating how to use AliSim with standard/complex models
Fix DNA model code example (thanks Joel Mercado)
Partially update doc version 2
reference 'Zharkikh, 1994' corrected (kh was swapped)
typos corrected and a note added
change dx.doi.org to doi.org
update doc for 1.6
update custom codon model
change citation for UFBoot
Heiko's suggestion on model descriptions
HIVw and HIVb ref update