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Revisions

  • AliSim 3Di/TEA: note auto-classifier is less reliable on simulated data; specify -st

    @thomaskf thomaskf committed Jun 24, 2026
    9e005e8

  • Remove Content classification subsection from structural-alphabet models

    @thomaskf thomaskf committed Jun 23, 2026
    46e73a7

  • AliSim 3Di/TEA: recommend ASR root to capture site dependence

    @thomaskf thomaskf committed Jun 23, 2026
    a89beb7

  • Document 3Di and TEA structural-alphabet models

    @thomaskf thomaskf committed Jun 23, 2026
    a3bf705

  • Clarify branch-specific rate heterogeneity models

    @trongnhanuit trongnhanuit committed Nov 4, 2025
    1dd0f2a

  • Update citations

    @trongnhanuit trongnhanuit committed Apr 28, 2025
    2046390

  • Update 2.4.0 as the recommendation version for AliSim

    @trongnhanuit trongnhanuit committed Apr 23, 2025
    d95a411

  • Change IQ-TREE 2 to IQ-TREE 3 (if necessary)

    @trongnhanuit trongnhanuit committed Apr 23, 2025
    78e28dc

  • change all iqtree2 to iqtree3 (except "for older versions")

    @trongnhanuit trongnhanuit committed Apr 23, 2025
    f389feb

  • Merge branch 'master' of https://github.com/iqtree/iqtree3.wiki

    @trongnhanuit trongnhanuit committed Apr 23, 2025
    3a77cf6

  • Initial Home page

    @trongnhanuit trongnhanuit committed Apr 19, 2025
    457e4d2

  • update recipe about simulating multiple trees

    @bqminh bqminh committed Apr 3, 2025
    cd12c83

  • Merge branch 'MCMCtree_dating'

    @bqminh bqminh committed Apr 3, 2025
    10663db

  • Merge branch 'master' into MCMCtree_dating

    @bqminh bqminh committed Apr 3, 2025
    339ea07

  • update recipes for simulating multiple tree alignments

    @bqminh bqminh committed Apr 3, 2025
    e3dd309

  • update SPRTA options

    @trongnhanuit trongnhanuit committed Mar 28, 2025
    0785b9e

  • Update Complex-Models.md

    @HuaiyanRen HuaiyanRen committed Mar 12, 2025
    f15b4b7

  • Reformatted commandlines for mcmctree doc.

    @piyumalanthony piyumalanthony committed Feb 27, 2025
    b51fb61

  • reformating the mcmctree doc, more revision needed

    @bqminh bqminh committed Feb 27, 2025
    639a1b3

  • Added user manual for MCMCtree approximate likelihood dating.

    @piyumalanthony piyumalanthony committed Feb 26, 2025
    3e114bd

  • Updated AliSim (markdown)

    @heikotree heikotree committed Feb 21, 2025
    58f4906

  • Updated AliSim (markdown)

    @heikotree heikotree committed Feb 21, 2025
    cea86a9

  • add double quotes to avoid errors due to curly bracket parsing - converting A{1,2} into A1 A2

    @trongnhanuit trongnhanuit committed Feb 18, 2025
    a0a5c21

  • add alrt and sprta options

    @trongnhanuit trongnhanuit committed Feb 18, 2025
    7c592ff

  • Merge branch 'master' of https://github.com/iqtree/iqtree2.wiki

    @HuaiyanRen HuaiyanRen committed Jan 8, 2025
    0711014

  • Update Complex-Models.md

    @HuaiyanRen HuaiyanRen committed Jan 8, 2025
    ffb5ea3

  • update link to concordance recipes

    @bqminh bqminh committed Aug 2, 2024
    173a365

  • move concordance vector to recipes

    @bqminh bqminh committed Aug 2, 2024
    3691273

  • Update MixtureFinder

    @HuaiyanRen HuaiyanRen committed Jul 31, 2024
    ef3a7f7

  • Merge branch 'master' of https://github.com/iqtree/iqtree2.wiki

    @HuaiyanRen HuaiyanRen committed Jul 31, 2024
    f334521