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Update Complex-Models.md Testing whether it works.
Updated Tutorial (markdown)
Updated Frequently Asked Questions (markdown)
add version for --mutation feature
revise mutation rule
Minor changes in AliSim
Add option to set the starting index
Update AliSim - Pre-define mutations
Use a comma (instead of a forward slash) as the separator for predefining a list of mutations
Add urls
Support predefined mutations in AliSim
Updated Command Reference (markdown)
show/hide command lines to accommodate advanced users
update tutorial for MOLE 2023
update index of workshops
draft tutorial for MOLE 2023 workshop
Change -af to --out-format
change diff to maple
Add MAPLE format
Update AliSim paper(s)
update sCF document with new citation in Bioinformatics
Update user manual for MAST model
add warning
Update on the user manual for MAST model