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4 changes: 4 additions & 0 deletions .github/workflows/basic_checks.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -16,6 +16,10 @@ jobs:

- name: Query dependencies and update old packages
run: |
# We'll install the specific versions from the install instructions and because of print bug
BiocManager::install("stemangiola/tidySingleCellExperiment@v1.7.2")

# Then install the other dependencies in the usual way
BiocManager::install(ask=FALSE)
saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
shell: Rscript {0}
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