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Switch MCP inputSchema fields that represent "no value" from .nullable()-only to .optional().nullable() so tool calls work for agents that omit unused fields (Claude Code, OpenCode, Gemini CLI) and agents that send explicit null (Codex). Handlers coalesce null to undefined before forwarding to the engine client. Docs for the six affected tools (create, update, search, tree, import, export) updated to describe optional params as \`T | null\` with "omit or pass null" semantics.
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