The Microbial Co-occurrence Network Explorer
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Updated
Oct 17, 2023 - Python
The Microbial Co-occurrence Network Explorer
16s rRNA Sequencing Meta-analysis Reproducibility Tool (using mothur).
The `crest4` python package can automatically assign taxonomic names to DNA sequences obtained from environmental sequencing.
A tool to identify and extract the commonly used ITS folding motifs from a 16s-23s rRNA sequence.
Prepare a report for taxonomic assignment based on 16S rRNA sequences, using BLAST.
process raw reads from ubiome
The `pacmill` python package is a bioinformatics pipeline that is developed to process microbial 16S amplicon sequencing data and produce PDF reports detailing taxonomical assignments along with other statistics.
Next Generation Phylogenetic Microbiome Analysis Framework
Chloroplast 16S removal from Metagenomics samples (or any NGS samples)
A novel taxonomy-independent deep learning microbiome approach allow for accuaret classification of human epithelial materials
List of sequencer runs; QC and run Info from each run, modular display of all existing (uploaded) types of info and statistics.
A general 16S rDNA sequencing analysis pipeline
Reverse Complement PCR (RC-PCR_ Classification pipeline.
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