FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
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Updated
Nov 21, 2023 - Python
FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
A Collection of Bioinformatics Projects
Tools for phylogenetic data analysis including visualization and cluster-computing support.
A unified searchable database of 16S rRNA amplicon libraries
A general 16S rDNA sequencing analysis pipeline
Reverse Complement PCR (RC-PCR_ Classification pipeline.
Pipeline for amplicon sequencing projects. OTUs can be build with various methods (usearch,vsearch,uparse,swarm) and classified using the RDP Classifier and SINA. Final output is a BIOM file for downstream processing (Phyloseq/R)
List of sequencer runs; QC and run Info from each run, modular display of all existing (uploaded) types of info and statistics.
QIIME 2 plugin for analyzing biological pathway information based on gene family abundances
Preprocessing for 16S rDNA Illumina reads
Tools for phylogenetic data analysis including visualization and cluster-computing support.
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