Meta16s - an all-in-one solution for streamlined 16s analyses

Analysis of 16S data on the cochineal insect

A simple script to detect chimeric sequences in 16S/18S metagenomic samples.

Analyses Pros-RODAM microbiota data

Code that was used to generate figures for the Mahmoudi et al., 2013 publication

Anchor is a 16S rRNA gene amplicon pipeline for microbial analysis of multiple environmental samples.

High Throughput Sequencing at your fingertips

nyankomicro is a in-house package that aims to make the plots more beautiful.

This website gives an introduction to microbial community analysis.

Pipeline for amplicon sequencing projects. OTUs can be build with various methods (usearch,vsearch,uparse,swarm) and classified using the RDP Classifier and SINA. Final output is a BIOM file for downstream processing (Phyloseq/R)

Store results of 16S OTU clsuters to track and compare and analyze.

Outlines the process of testing for statistical differences in certain taxa by group utilizing the phyloseq, tidyverse, and various statistical packages within R.

A general 16S rDNA sequencing analysis pipeline

Reverse Complement PCR (RC-PCR_ Classification pipeline.

Script to unzip, clean, assemble, and convert illumina pair-end fastq files in all subdirectories for 16S amplicon data (V3, V4 and V3-V4 regions).

16S Microbiome Analysis Pipeline. This version written in Nextflow.

low biomass and background artifacts have been the main challenges in the analysis of microbial cell-free DNA (cfDNA) in blood. In this study, we developed a quality-filtering strategy, this pipeline allows us to evaluate and exclude potential contaminations and artifacts

Vendor tree for 16s