dna protein prediction using transformer. second version of engima-1.5b
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Updated
Jul 30, 2024 - Python
dna protein prediction using transformer. second version of engima-1.5b
PyMOL extension to color AlphaFold structures by confidence (pLDDT).
RNA, mRNA, DNA, Peptide, Protein, Antibody and Complex | Folding
Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
Repository of Jupyter Notebooks created by the Bio2Byte group
An open-source platform for developing protein models beyond AlphaFold.
AlphaFind: Discover structure similarity across the entire known proteome
BETA provides datasets of structures and sequences that were not used during AlphaFold training.
This package provides an basic implementation of the contact prediction network used in AlphaFold 1 for beginner, associated model weights and CASP13 dataset as used for CASP13 (2018) and published in Nature
Screen interactions with AlphaFold-Multimer
molecular graph representation
Stand-alone server for structural proteome curation
Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.
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