Side project to find jointly accessible regions in pairs of celltypes

This is an automated workflow pipeline for analyzing bulk ATAC-seq data, implemented primarily in bash scripts, and wrapped in a NextFlow workflow.

This repo contains additional resources for the maxATAC Python package.

ATAC-seq lab for BIOINF525

ATAC-seq processing pipeline

ATAC-seq lab for BIOINF545

Analysis pipelines for genomic sequencing data

Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)