Code for the article In toto imaging and reconstruction of post-implantation mouse development at the single-cell level
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Updated
Sep 17, 2018 - Python
Code for the article In toto imaging and reconstruction of post-implantation mouse development at the single-cell level
MRI ImageJ related python (jython) module.
AI-based pathology predicts origins for cancers of unknown primary - Nature
Visualise pcnaDeep single-cell tracking data
cialab/DeepSlides fork to make it work with newer Python libraries.
CaMOS, a GUI for analysis of multimodal neuroscience datasets.
Collection of useful (to me) python scripts for interacting with napari
Python code that I used in my blog posts on the Zarr file format.
Scripts to estimate distances from PICT
Connect Napari with FIJI/ImageJ
Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering
Image data and Python scripts for the course on Bioimage analysis with Napari
Create a nice exploded visualization of segmented cells in a tissue.
Quantifying the dynamics of long-range cell-cell mechanical communication paper code
Track single cells and profile the cell cycle with PCNA fluorescence images
Package for performing automated bio-image analysis tasks.
Fiji plugin for object(s) detection using template(s) matching
Guides and code for 3D nuclear instance segmentation
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