StarDist - Object Detection with Star-convex Shapes
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Updated
Apr 27, 2024 - Python
StarDist - Object Detection with Star-convex Shapes
AI-based pathology predicts origins for cancers of unknown primary - Nature
A tool for cell instance aware segmentation in densely packed 3D volumetric images
Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering
A vision-language foundation model for computational pathology - Nature Medicine
Fiji plugin for object(s) detection using template(s) matching
Fast reconstruction of spatial networks from bioimages.
Collection of useful (to me) python scripts for interacting with napari
MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification
Connect Napari with FIJI/ImageJ
Visualise pcnaDeep single-cell tracking data
computer vision models for single-cell phenotyping
Track single cells and profile the cell cycle with PCNA fluorescence images
Guides and code for 3D nuclear instance segmentation
Create a nice exploded visualization of segmented cells in a tissue.
MRI ImageJ related python (jython) module.
Quantifying the dynamics of long-range cell-cell mechanical communication paper code
CaMOS, a GUI for analysis of multimodal neuroscience datasets.
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